Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.2e-48 195.3 98 100.0
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.1e-26 123.2 95 63.2
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.8e-26 122.5 93 64.5
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.4e-26 122.1 94 63.8
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.4e-26 122.1 93 60.2
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.4e-26 122.1 94 61.7
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.4e-26 122.1 93 63.4
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 5.3e-26 120.9 97 62.9
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 7.0e-26 120.6 93 63.4
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.1e-26 120.2 97 62.9
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.5e-25 119.4 93 62.4
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.6e-25 118.6 98 61.2
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 4.5e-25 117.9 95 63.2
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 5.9e-25 117.5 98 58.2
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 5.9e-25 117.5 89 62.9
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.9e-25 117.5 93 61.3
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 1.0e-24 116.7 86 68.6
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.0e-24 116.7 93 59.1
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.3e-24 116.3 93 60.2
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.7e-24 115.9 93 62.4
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.7e-24 115.9 93 62.4
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.7e-24 115.9 90 63.3
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 2.2e-24 115.5 90 62.2
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.2e-24 115.5 91 63.7
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.2e-24 115.5 91 63.7
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.2e-24 115.5 90 63.3
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 2.2e-24 115.5 94 61.7
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.2e-24 115.5 97 63.9
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 2.9e-24 115.2 93 62.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.9e-24 115.2 98 58.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.9e-24 115.2 93 57.0
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.8e-24 114.8 89 60.7
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.8e-24 114.8 89 60.7
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 3.8e-24 114.8 83 67.5
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 5.0e-24 114.4 93 61.3
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 5.0e-24 114.4 93 61.3
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 5.0e-24 114.4 93 61.3
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 5.0e-24 114.4 100 56.0
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 5.0e-24 114.4 83 67.5
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 6.5e-24 114.0 93 59.1
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 6.5e-24 114.0 83 67.5
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 6.5e-24 114.0 94 61.7
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 6.5e-24 114.0 93 59.1
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 8.5e-24 113.6 93 58.1
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 8.5e-24 113.6 93 60.2
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 8.5e-24 113.6 89 59.6
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.5e-24 113.6 89 59.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.5e-24 113.6 89 59.6
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 8.5e-24 113.6 99 59.6
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 8.5e-24 113.6 94 61.7
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 8.5e-24 113.6 83 68.7
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 8.5e-24 113.6 93 61.3
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 8.5e-24 113.6 93 60.2
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 8.5e-24 113.6 93 62.4
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 8.5e-24 113.6 93 62.4
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.1e-23 113.2 90 63.3
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.1e-23 113.2 93 60.2
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.5e-23 112.8 93 60.2
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.5e-23 112.8 93 61.3
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.5e-23 112.8 94 58.5
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.5e-23 112.8 93 58.1
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.9e-23 112.5 93 60.2
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.9e-23 112.5 93 60.2
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.9e-23 112.5 93 60.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.9e-23 112.5 93 60.2
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.9e-23 112.5 97 59.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.9e-23 112.5 93 59.1
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.9e-23 112.5 93 59.1
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 2.5e-23 112.1 90 61.1
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.5e-23 112.1 98 60.2
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.2e-23 111.7 93 60.2
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.2e-23 111.7 93 58.1
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 3.2e-23 111.7 93 59.1
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 3.2e-23 111.7 93 59.1
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 3.2e-23 111.7 93 59.1
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 3.2e-23 111.7 95 60.0
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.2e-23 111.3 93 60.2
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 4.2e-23 111.3 90 62.2
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 4.2e-23 111.3 90 62.2
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 4.2e-23 111.3 97 60.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 4.2e-23 111.3 93 59.1
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 4.2e-23 111.3 95 60.0
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 5.5e-23 110.9 93 59.1
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 5.5e-23 110.9 93 58.1
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 5.5e-23 110.9 93 59.1
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 5.5e-23 110.9 93 59.1
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 5.5e-23 110.9 90 62.2
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 5.5e-23 110.9 93 55.9
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 5.5e-23 110.9 98 61.2
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 7.2e-23 110.5 86 61.6
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 9.4e-23 110.2 90 58.9
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 9.4e-23 110.2 100 59.0
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-22 109.8 93 59.1
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.2e-22 109.8 83 66.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.6e-22 109.4 93 57.0
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.6e-22 109.4 99 60.6
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 2.1e-22 109.0 93 57.0
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 2.1e-22 109.0 93 57.0
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.1e-22 109.0 93 60.2
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 2.7e-22 108.6 93 57.0
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 2.7e-22 108.6 96 57.3
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 2.7e-22 108.6 93 54.8
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 3.6e-22 108.2 93 57.0
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.7e-22 107.8 82 63.4
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.7e-22 107.8 82 67.1
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.7e-22 107.8 82 67.1
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 4.7e-22 107.8 97 57.7
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 4.7e-22 107.8 88 61.4
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 6.1e-22 107.5 93 52.7
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 6.1e-22 107.5 86 65.1
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 8.0e-22 107.1 88 59.1
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 8.0e-22 107.1 93 54.8
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.0e-21 106.7 94 56.4
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.0e-21 106.7 89 61.8
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.0e-21 106.7 88 60.2
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.0e-21 106.7 94 53.2
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.0e-21 106.7 83 61.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.4e-21 106.3 82 65.9
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.8e-21 105.9 95 56.8
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.8e-21 105.9 93 57.0
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.3e-21 105.5 75 70.7
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 5.2e-21 104.4 89 57.3
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 5.2e-21 104.4 86 59.3
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.1e-20 103.2 95 56.8
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.1e-20 103.2 95 56.8
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.0e-20 102.4 95 55.8
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 2.0e-20 102.4 93 52.7
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 3.3e-20 101.7 83 60.2
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 4.4e-20 101.3 95 52.6
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 5.7e-20 100.9 93 55.9
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.7e-20 100.9 114 48.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.3e-19 99.8 83 60.2
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.7e-19 99.4 94 55.3
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 3.7e-19 98.2 80 61.2
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.4e-18 95.5 79 55.7
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.1e-18 95.1 82 57.3
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.3e-16 89.7 94 48.9
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.2e-16 89.0 88 53.4
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.9e-16 88.6 93 49.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.2e-15 85.1 61 68.9
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 9.4e-15 83.6 83 50.6
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 9.4e-15 83.6 80 51.2
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.1e-14 82.4 83 50.6
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.7e-14 82.0 82 56.1
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.4e-13 79.7 63 57.1
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.8e-13 79.3 60 65.0
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.3e-13 79.0 55 70.9
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.5e-12 76.3 94 43.6
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 4.5e-09 64.7 50 52.0
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 4.2e-07 58.2 63 54.0


User provided reference genes

Program Settings