Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 0.0e+00 1376.3 665 100.0
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 1.9e-127 460.7 698 40.0
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 2.0e-124 450.7 647 38.9
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.7e-123 447.6 632 42.6
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.0e-120 438.3 647 39.6
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.3e-115 421.4 653 38.6
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.4e-114 417.9 660 37.9
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 2.1e-113 414.1 642 38.3
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 1.8e-109 401.0 675 38.8
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.3e-107 394.8 658 37.5
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.3e-107 394.8 645 38.6
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 1.4e-106 391.3 637 38.5
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 2.4e-106 390.6 645 38.9
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 7.1e-106 389.0 692 35.0
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 1.6e-105 387.9 670 34.8
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 3.9e-104 383.3 665 36.5
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 5.1e-104 382.9 684 35.5
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 2.5e-103 380.6 650 36.3
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 2.5e-103 380.6 675 35.0
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 3.3e-103 380.2 639 37.2
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 7.4e-103 379.0 623 36.6
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 4.8e-102 376.3 653 36.0
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.8e-101 374.4 643 37.0
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.8e-101 374.4 642 36.6
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 3.1e-101 373.6 675 35.9
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 6.9e-101 372.5 679 35.8
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 1.2e-100 371.7 662 35.6
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.5e-100 371.3 651 36.4
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.4e-100 370.2 643 36.5
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 4.5e-100 369.8 662 34.7
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 5.8e-100 369.4 637 35.3
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 1.7e-99 367.9 672 35.7
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 4.9e-99 366.3 639 36.8
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.5e-99 365.9 643 36.2
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.4e-98 364.8 655 35.3
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 2.5e-98 364.0 649 35.7
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 3.2e-98 363.6 637 36.4
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.2e-98 363.6 655 35.7
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 3.2e-98 363.6 655 35.4
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 7.1e-98 362.5 624 36.2
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 7.1e-98 362.5 624 36.2
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 9.3e-98 362.1 654 35.5
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 1.2e-97 361.7 621 35.7
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 2.7e-97 360.5 698 34.2
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 2.7e-97 360.5 672 35.3
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.7e-97 360.5 640 35.5
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 3.5e-97 360.1 641 36.5
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.9e-95 354.4 617 36.0
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 4.3e-95 353.2 679 35.8
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 7.4e-95 352.4 652 35.3
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 8.2e-94 349.0 690 32.5
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 9.0e-93 345.5 626 35.3
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 2.6e-92 344.0 657 33.6
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 4.5e-92 343.2 609 35.5
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 5.8e-92 342.8 671 34.1
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.3e-91 341.7 617 36.0
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 2.2e-91 340.9 650 33.7
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 2.9e-91 340.5 676 32.0
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 5.0e-91 339.7 641 34.9
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 5.0e-91 339.7 706 32.2
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 6.5e-91 339.3 642 35.7
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.6e-89 334.7 673 33.3
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 2.7e-89 334.0 640 34.2
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 7.9e-89 332.4 660 33.0
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 7.9e-89 332.4 646 33.9
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 7.9e-89 332.4 616 35.2
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.0e-88 332.0 624 34.5
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 2.3e-88 330.9 664 32.5
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 5.1e-88 329.7 640 35.5
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.4e-87 325.9 517 38.3
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 3.7e-86 323.6 626 34.5
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 6.3e-86 322.8 677 32.1
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 6.3e-86 322.8 539 37.5
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.5e-84 318.2 627 32.7
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 5.9e-84 316.2 473 36.8
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 7.7e-84 315.8 606 34.3
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 1.0e-83 315.5 685 32.0
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.4e-82 311.6 657 31.5
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 2.5e-82 310.8 653 32.5
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 3.6e-81 307.0 613 33.9
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 1.8e-80 304.7 637 32.2
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 6.3e-78 296.2 641 32.0
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 5.3e-77 293.1 629 31.8
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 6.9e-77 292.7 641 31.7
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 5.9e-76 289.7 655 31.0
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.9e-74 284.6 650 32.2
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 4.2e-74 283.5 473 36.2
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.2e-73 282.0 645 31.3
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.7e-73 280.8 638 30.3
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 4.7e-73 280.0 636 31.0
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 6.1e-73 279.6 624 30.9
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 6.7e-72 276.2 626 30.8
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 6.7e-72 276.2 652 30.7
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.6e-71 274.2 451 39.9
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 3.3e-71 273.9 633 30.3
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 4.8e-70 270.0 432 39.8
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.2e-68 265.4 563 31.6
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 4.8e-54 216.9 515 31.1
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 8.3e-54 216.1 641 27.8
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 2.7e-49 201.1 726 25.8
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 7.2e-42 176.4 393 29.3
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 6.8e-40 169.9 528 30.3
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 6.2e-33 146.7 599 24.0
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.5e-31 142.1 265 30.9
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 5.8e-31 140.2 305 32.5
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.3e-26 124.4 232 31.9
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 9.5e-18 96.3 343 26.8
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.8e-17 94.7 167 37.1
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 1.8e-16 92.0 105 39.0
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 1.9e-10 72.0 127 32.3
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 6.2e-09 67.0 93 45.2
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 2.2e-06 58.5 45 48.9


User provided reference genes

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