Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018975 Vanilla planifolia HOM05D002148 ORTHO05D002547 4.6e-100 367.9 179 100.0
MBI14_g37016_MAGBIO Magnolia biondii HOM05D002148 ORTHO05D002547 5.9e-15 85.1 58 69.0
Nn1g07557 Nelumbo nucifera HOM05D002148 ORTHO05D002547 7.7e-15 84.7 66 65.2
TAR627G0712 Trochodendron aralioides HOM05D002148 ORTHO05D002547 3.8e-14 82.4 58 63.8
TAR624G1030 Trochodendron aralioides HOM05D002148 ORTHO05D002547 8.5e-14 81.3 62 61.3
MBI15_g44613_MAGBIO Magnolia biondii HOM05D002148 ORTHO05D002547 1.1e-13 80.9 58 67.2
CDE10G1051 Ceratophyllum demersum HOM05D002148 ORTHO05D002547 4.7e-12 75.5 55 69.1
ATR0751G250 Amborella trichopoda HOM05D002148 ORTHO05D002547 1.8e-11 73.6 58 58.6
Ciclev10014215m.g Citrus clementina HOM05D002148 ORTHO05D002547 3.0e-11 72.8 58 65.5
TAR626G1137 Trochodendron aralioides HOM05D002148 ORTHO05D002547 4.0e-11 72.4 50 70.0
TAR629G2527 Trochodendron aralioides HOM05D002148 ORTHO05D002547 8.8e-11 71.2 58 60.3
TWI75G1666 Tripterygium wilfordii HOM05D002148 ORTHO05D002547 3.4e-10 69.3 63 57.1
Potri.002G217000 Populus trichocarpa HOM05D002148 ORTHO05D002547 4.4e-10 68.9 58 62.1
Sabra14G0129500 Salix brachista HOM05D002148 ORTHO05D002547 5.7e-10 68.6 58 62.1
Sed0021061 Sechium edule HOM05D002148 ORTHO05D002547 7.5e-10 68.2 54 61.1
Sed0020960 Sechium edule HOM05D002148 ORTHO05D002547 9.8e-10 67.8 54 61.1
COL.COLO4_19648 Corchorus olitorius HOM05D002148 ORTHO05D002547 1.3e-09 67.4 58 58.6
Dinv21318 Davidia involucrata HOM05D002148 ORTHO05D002547 1.3e-09 67.4 58 60.3
Actinidia20602 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.7e-09 67.0 62 58.1
arahy.Tifrunner.gnm1.ann1.P32D72 Arachis hypogaea HOM05D002148 ORTHO05D002547 2.2e-09 66.6 55 60.0
Actinidia20615 Actinidia chinensis HOM05D002148 ORTHO05D002547 2.8e-09 66.2 75 52.0
CSS0015139 Camellia sinensis var. sinensis HOM05D002148 ORTHO05D002547 3.7e-09 65.9 58 60.3
CSS0046156 Camellia sinensis var. sinensis HOM05D002148 ORTHO05D002547 3.7e-09 65.9 58 60.3
ClCG02G002990 Citrullus lanatus HOM05D002148 ORTHO05D002547 4.9e-09 65.5 54 59.3
arahy.Tifrunner.gnm1.ann1.HRA0AN Arachis hypogaea HOM05D002148 ORTHO05D002547 6.3e-09 65.1 55 60.0
arahy.Tifrunner.gnm1.ann1.WLXW46 Arachis hypogaea HOM05D002148 ORTHO05D002547 6.3e-09 65.1 55 60.0
MELO3C024186.2 Cucumis melo HOM05D002148 ORTHO05D002547 6.3e-09 65.1 54 59.3
CsaV3_7G002410 Cucumis sativus L. HOM05D002148 ORTHO05D002547 6.3e-09 65.1 54 59.3
Hma1.2p1_0599F.1_g187000 Hydrangea macrophylla HOM05D002148 ORTHO05D002547 6.3e-09 65.1 58 60.3
TWI36G0804 Tripterygium wilfordii HOM05D002148 ORTHO05D002547 6.3e-09 65.1 62 54.8
BcaC05g29561 Brassica carinata HOM05D002148 ORTHO05D002547 8.3e-09 64.7 58 55.2
HPP92_018907 Vanilla planifolia HOM05D002148 ORTHO05D002547 8.3e-09 64.7 118 41.5
Gohir.A11G148100 Gossypium hirsutum HOM05D002148 ORTHO05D002547 1.1e-08 64.3 66 54.5
Gohir.D11G154900 Gossypium hirsutum HOM05D002148 ORTHO05D002547 1.1e-08 64.3 66 54.5
Gorai.007G165200 Gossypium raimondii HOM05D002148 ORTHO05D002547 1.1e-08 64.3 66 54.5
CANSAT64G1317 Cannabis sativa HOM05D002148 ORTHO05D002547 1.4e-08 63.9 55 60.0
Atru.chr6.3425 Acer truncatum HOM05D002148 ORTHO05D002547 2.4e-08 63.2 68 55.9
PSO675G6761 Papaver somniferum HOM05D002148 ORTHO05D002547 2.4e-08 63.2 61 55.7
Aa31LG5G18240 Aethionema arabicum HOM05D002148 ORTHO05D002547 3.1e-08 62.8 56 58.9
C05p59660 Brassica napus HOM05D002148 ORTHO05D002547 3.1e-08 62.8 107 40.2
BolC5t34620H Brassica oleracea HOM05D002148 ORTHO05D002547 3.1e-08 62.8 107 40.2
PSO541G3380 Papaver somniferum HOM05D002148 ORTHO05D002547 3.1e-08 62.8 60 56.7
Potri.014G169900 Populus trichocarpa HOM05D002148 ORTHO05D002547 3.1e-08 62.8 58 58.6
vmacro12065 Vaccinium macrocarpon HOM05D002148 ORTHO05D002547 3.1e-08 62.8 103 37.9
A05p40550 Brassica napus HOM05D002148 ORTHO05D002547 4.1e-08 62.4 58 53.4
BraA05t22786Z Brassica rapa HOM05D002148 ORTHO05D002547 4.1e-08 62.4 58 53.4
Dinv05320 Davidia involucrata HOM05D002148 ORTHO05D002547 4.1e-08 62.4 58 56.9
GSVIVG01030121001 Vitis vinifera HOM05D002148 ORTHO05D002547 4.1e-08 62.4 58 53.4
CAN.G550.1 Capsicum annuum HOM05D002148 ORTHO05D002547 5.4e-08 62.0 58 55.2
Cpa.g.sc136.47 Carica papaya HOM05D002148 ORTHO05D002547 5.4e-08 62.0 58 56.9
AL3G19020 Arabidopsis lyrata HOM05D002148 ORTHO05D002547 7.0e-08 61.6 58 51.7
Manes.12G063603 Manihot esculenta HOM05D002148 ORTHO05D002547 7.0e-08 61.6 58 56.9
Nitab4.5_0000006g0540 Nicotiana tabacum HOM05D002148 ORTHO05D002547 7.0e-08 61.6 58 53.4
CSS0048251 Camellia sinensis var. sinensis HOM05D002148 ORTHO05D002547 1.2e-07 60.8 55 58.2
CARHR082360 Cardamine hirsuta HOM05D002148 ORTHO05D002547 1.2e-07 60.8 58 53.4
Duzib138G1901 Durio zibethinus HOM05D002148 ORTHO05D002547 1.2e-07 60.8 55 58.2
QL04p067065 Quercus lobata HOM05D002148 ORTHO05D002547 1.2e-07 60.8 55 56.4
Sp3g06600 Schrenkiella parvula HOM05D002148 ORTHO05D002547 1.2e-07 60.8 66 48.5
THA.LOC104802632 Tarenaya hassleriana HOM05D002148 ORTHO05D002547 1.2e-07 60.8 58 53.4
MSTRG.14911 Avicennia marina HOM05D002148 ORTHO05D002547 1.6e-07 60.5 55 56.4
Peaxi162Scf00612g00015 Petunia axillaris HOM05D002148 ORTHO05D002547 1.6e-07 60.5 58 51.7
Hund01531 Selenicereus undatus HOM05D002148 ORTHO05D002547 2.0e-07 60.1 58 56.9
Actinidia18828 Actinidia chinensis HOM05D002148 ORTHO05D002547 2.7e-07 59.7 58 55.2
Manes.13G060300 Manihot esculenta HOM05D002148 ORTHO05D002547 2.7e-07 59.7 58 55.2
Psat2g060320 Pisum sativum HOM05D002148 ORTHO05D002547 3.5e-07 59.3 47 57.4
Gorai.001G098400 Gossypium raimondii HOM05D002148 ORTHO05D002547 4.5e-07 58.9 54 55.6
Prupe.3G195400 Prunus persica HOM05D002148 ORTHO05D002547 4.5e-07 58.9 55 58.2
THA.LOC104819030 Tarenaya hassleriana HOM05D002148 ORTHO05D002547 4.5e-07 58.9 103 40.8
THA.LOC104822439 Tarenaya hassleriana HOM05D002148 ORTHO05D002547 4.5e-07 58.9 58 51.7
Glyma.02G222900 Glycine max HOM05D002148 ORTHO05D002547 5.9e-07 58.5 47 57.4
Gohir.A07G087000 Gossypium hirsutum HOM05D002148 ORTHO05D002547 5.9e-07 58.5 54 53.7
MD09G1129800 Malus domestica HOM05D002148 ORTHO05D002547 5.9e-07 58.5 55 58.2
Phvul.008G189700 Phaseolus vulgaris HOM05D002148 ORTHO05D002547 5.9e-07 58.5 47 57.4
SEGI_08865 Sequoiadendron giganteum HOM05D002148 ORTHO05D002547 1.0e-06 57.8 58 50.0
Duzib133G1139 Durio zibethinus HOM05D002148 ORTHO05D002547 1.3e-06 57.4 50 54.0
FvH4_6g40450 Fragaria vesca HOM05D002148 ORTHO05D002547 1.3e-06 57.4 55 58.2
FAN05G3894 Fragaria x ananassa HOM05D002148 ORTHO05D002547 1.3e-06 57.4 55 58.2
FAN14G1326 Fragaria x ananassa HOM05D002148 ORTHO05D002547 1.3e-06 57.4 55 58.2
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.7e-06 57.0 58 53.4
Glyma.14G189900 Glycine max HOM05D002148 ORTHO05D002547 1.7e-06 57.0 47 55.3
Carub.0003s0724 Capsella rubella HOM05D002148 ORTHO05D002547 2.3e-06 56.6 57 50.9
Thhalv10020055m.g Eutrema salsugineum HOM05D002148 ORTHO05D002547 2.3e-06 56.6 58 50.0
TPR.G13836 Trifolium pratense HOM05D002148 ORTHO05D002547 2.3e-06 56.6 47 53.2
CAN.G1071.5 Capsicum annuum HOM05D002148 ORTHO05D002547 2.9e-06 56.2 52 50.0
Cc05_g02040 Coffea canephora HOM05D002148 ORTHO05D002547 2.9e-06 56.2 58 53.4
MD17G1118800 Malus domestica HOM05D002148 ORTHO05D002547 2.9e-06 56.2 55 56.4
DCAR_008746 Daucus carota HOM05D002148 ORTHO05D002547 3.8e-06 55.8 72 44.4
RcHm_v2.0_Chr2g0155681 Rosa chinensis HOM05D002148 ORTHO05D002547 3.8e-06 55.8 55 56.4
Sc06g0009940 Simmondsia chinensis HOM05D002148 ORTHO05D002547 3.8e-06 55.8 127 34.6
Medtr5g069290 Medicago truncatula HOM05D002148 ORTHO05D002547 5.0e-06 55.5 55 47.3
BcaB04g21276 Brassica carinata HOM05D002148 ORTHO05D002547 6.6e-06 55.1 138 33.3
Lj1C799G7 Lonicera japonica HOM05D002148 ORTHO05D002547 6.6e-06 55.1 107 37.4
HanXRQChr03g0074981 Helianthus annuus HOM05D002148 ORTHO05D002547 8.6e-06 54.7 65 47.7
TPR.G27467 Trifolium pratense HOM05D002148 ORTHO05D002547 8.6e-06 54.7 62 48.4


User provided reference genes

Program Settings