Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 5.6e-74 280.8 137 100.0
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.6e-39 165.6 129 62.8
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.3e-38 163.3 130 60.8
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.7e-38 162.9 134 59.7
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 5.0e-38 161.4 127 59.8
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 1.2e-36 156.8 132 57.6
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.2e-36 156.8 130 57.7
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 2.7e-36 155.6 139 54.7
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 3.6e-36 155.2 128 59.4
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 1.0e-35 153.7 139 53.2
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.0e-35 153.7 140 55.7
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.4e-35 153.3 132 57.6
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.8e-35 152.9 132 56.8
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.8e-35 152.9 130 56.9
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.6e-34 149.1 131 57.3
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 3.3e-34 148.7 129 56.6
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.3e-34 148.7 132 56.8
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.7e-33 146.4 136 55.1
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 2.2e-33 146.0 128 56.2
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 3.7e-33 145.2 128 57.0
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 4.8e-33 144.8 132 54.5
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 4.8e-33 144.8 130 57.7
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 8.2e-33 144.1 128 55.5
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 8.2e-33 144.1 128 55.5
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.8e-32 142.9 132 53.8
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.8e-32 142.9 140 51.4
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 1.8e-32 142.9 133 57.1
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 3.1e-32 142.1 132 55.3
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 3.1e-32 142.1 140 50.7
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 4.1e-32 141.7 140 51.4
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 7.0e-32 141.0 131 55.0
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 7.0e-32 141.0 134 52.2
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 9.1e-32 140.6 142 53.5
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 1.5e-31 139.8 131 55.0
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.5e-31 139.8 130 55.4
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 2.0e-31 139.4 132 53.8
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 2.0e-31 139.4 128 55.5
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 2.6e-31 139.0 134 53.7
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.5e-31 138.3 133 55.6
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 4.5e-31 138.3 130 57.7
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 7.7e-31 137.5 130 57.7
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 7.7e-31 137.5 130 54.6
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 7.7e-31 137.5 128 55.5
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 7.7e-31 137.5 130 54.6
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 1.0e-30 137.1 130 54.6
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 1.0e-30 137.1 130 55.4
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.3e-30 136.7 141 53.2
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 1.3e-30 136.7 130 53.8
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.3e-30 136.7 137 52.6
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.7e-30 136.3 130 55.4
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.7e-30 136.3 132 53.0
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 1.7e-30 136.3 134 53.0
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.9e-30 135.6 128 56.2
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 3.8e-30 135.2 134 52.2
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 5.0e-30 134.8 128 56.2
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.0e-30 134.8 128 56.2
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.0e-30 134.8 128 56.2
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.0e-30 134.8 128 56.2
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 5.0e-30 134.8 134 52.2
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 6.5e-30 134.4 135 52.6
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 6.5e-30 134.4 128 54.7
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 6.5e-30 134.4 127 53.5
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.1e-29 133.7 88 68.2
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.1e-29 133.7 130 53.8
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 1.9e-29 132.9 128 53.1
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 2.5e-29 132.5 120 55.0
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 2.5e-29 132.5 120 55.0
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.2e-29 132.1 128 53.1
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 4.2e-29 131.7 106 60.4
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 7.2e-29 131.0 113 57.5
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 9.4e-29 130.6 132 50.8
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 1.2e-28 130.2 135 47.4
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 1.2e-28 130.2 129 55.0
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 2.1e-28 129.4 127 54.3
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 2.1e-28 129.4 133 50.4
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 2.7e-28 129.0 128 52.3
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 8.0e-28 127.5 128 52.3
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 8.0e-28 127.5 106 58.5
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.0e-27 127.1 128 51.6
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.8e-27 126.3 142 48.6
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.3e-27 125.9 125 52.8
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 3.0e-27 125.6 88 64.8
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 5.7e-26 121.3 128 50.8
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 5.7e-26 121.3 121 55.4
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 9.7e-26 120.6 127 50.4
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 2.2e-25 119.4 129 48.8
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 3.7e-25 118.6 129 48.8
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 4.8e-25 118.2 106 54.7
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 4.8e-25 118.2 129 48.1
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 4.8e-25 118.2 106 54.7
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 6.3e-25 117.9 105 56.2
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 8.2e-25 117.5 107 57.9
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 8.2e-25 117.5 107 57.9
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 8.2e-25 117.5 116 50.9
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 1.1e-24 117.1 116 50.9
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 2.4e-24 115.9 116 52.6
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 2.4e-24 115.9 128 48.4
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 3.1e-24 115.5 128 48.4
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 4.1e-24 115.2 128 47.7
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.1e-24 115.2 105 54.3
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 5.3e-24 114.8 106 53.8
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 7.0e-24 114.4 83 60.2
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 9.1e-24 114.0 134 47.0
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 1.2e-23 113.6 128 46.9
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 1.6e-23 113.2 128 46.9
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 3.5e-23 112.1 135 51.1
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 4.5e-23 111.7 112 51.8
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 7.7e-23 110.9 128 46.9
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 7.7e-23 110.9 108 50.9
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 1.0e-22 110.5 90 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 2.2e-22 109.4 112 50.9
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 2.2e-22 109.4 132 47.0
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 5.0e-22 108.2 128 46.1
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 1.5e-21 106.7 129 48.1
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 9.4e-21 104.0 81 63.0
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.6e-20 103.2 84 58.3
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.0e-19 100.5 83 56.6
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.8e-19 99.8 113 46.0
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 3.0e-19 99.0 134 42.5
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 9.1e-16 87.4 95 47.4
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 2.3e-11 72.8 60 58.3
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 3.0e-11 72.4 55 58.2
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.3e-09 67.0 69 47.8
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.7e-09 65.5 32 90.6
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.7e-09 65.5 32 90.6
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 3.7e-09 65.5 65 52.3
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 2.7e-07 59.3 34 73.5
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 5.9e-07 58.2 42 57.1
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.0e-06 57.4 34 73.5
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 5.0e-06 55.1 34 70.6


User provided reference genes

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