Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 2.7e-86 322.0 169 100.0
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 8.8e-77 290.4 155 99.4
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 5.5e-63 244.6 131 98.5
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 2.0e-33 146.4 131 58.0
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 2.7e-33 146.0 134 59.0
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 4.5e-33 145.2 133 60.2
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 7.8e-33 144.4 133 56.4
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 1.0e-32 144.1 134 57.5
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 2.3e-32 142.9 134 58.2
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 2.3e-32 142.9 134 55.2
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 5.0e-32 141.7 135 55.6
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 5.0e-32 141.7 145 52.4
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 6.6e-32 141.4 133 56.4
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 1.9e-31 139.8 134 57.5
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 3.3e-31 139.0 134 55.2
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 3.3e-31 139.0 134 56.7
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 3.3e-31 139.0 132 56.1
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 4.3e-31 138.7 134 56.7
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 5.6e-31 138.3 134 55.2
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 5.6e-31 138.3 133 53.4
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 7.3e-31 137.9 134 55.2
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 7.3e-31 137.9 134 56.0
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 7.3e-31 137.9 134 53.7
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 9.5e-31 137.5 133 55.6
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 1.2e-30 137.1 133 55.6
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 1.6e-30 136.7 135 51.9
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 1.6e-30 136.7 134 54.5
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.1e-30 136.3 135 56.3
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 2.8e-30 136.0 133 54.9
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 2.8e-30 136.0 135 53.3
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 3.6e-30 135.6 134 51.5
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 3.6e-30 135.6 135 57.0
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 3.6e-30 135.6 135 51.9
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 4.7e-30 135.2 137 52.6
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 4.7e-30 135.2 134 54.5
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 8.0e-30 134.4 134 53.0
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.0e-29 134.0 134 53.7
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.0e-29 134.0 134 53.7
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 1.8e-29 133.3 148 52.0
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 1.8e-29 133.3 134 54.5
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 2.3e-29 132.9 134 55.2
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 3.1e-29 132.5 134 50.0
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 3.1e-29 132.5 131 54.2
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 5.2e-29 131.7 134 53.7
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 6.8e-29 131.3 133 53.4
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 6.8e-29 131.3 133 54.1
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 6.8e-29 131.3 134 50.7
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 6.8e-29 131.3 133 52.6
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 6.8e-29 131.3 134 53.7
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 6.8e-29 131.3 134 53.7
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 1.2e-28 130.6 134 50.7
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 1.2e-28 130.6 134 52.2
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.5e-28 130.2 134 51.5
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 1.5e-28 130.2 134 50.7
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 2.0e-28 129.8 133 53.4
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 2.0e-28 129.8 135 51.9
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 2.0e-28 129.8 133 54.1
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 2.0e-28 129.8 132 53.8
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 4.4e-28 128.6 133 51.9
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 5.8e-28 128.3 133 52.6
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 5.8e-28 128.3 134 50.7
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 7.5e-28 127.9 134 51.5
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 1.3e-27 127.1 131 52.7
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 1.7e-27 126.7 134 52.2
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 2.2e-27 126.3 115 59.1
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 2.2e-27 126.3 133 51.1
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.2e-27 126.3 134 50.7
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.2e-27 126.3 134 50.7
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 2.9e-27 125.9 135 51.1
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 2.9e-27 125.9 143 51.7
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 4.9e-27 125.2 134 50.7
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 4.9e-27 125.2 133 53.4
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 6.4e-27 124.8 133 52.6
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 1.4e-26 123.6 135 50.4
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 3.2e-26 122.5 135 49.6
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 3.2e-26 122.5 135 49.6
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 3.2e-26 122.5 135 49.6
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 4.1e-26 122.1 135 50.4
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 4.1e-26 122.1 152 46.1
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 7.0e-26 121.3 134 49.3
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 9.2e-26 120.9 108 56.5
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 6.0e-25 118.2 135 48.9
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 1.3e-24 117.1 113 55.8
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 5.0e-24 115.2 115 54.8
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.5e-23 112.8 108 53.7
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.5e-23 112.8 108 53.7
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 2.5e-23 112.8 115 53.0
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 1.2e-22 110.5 132 47.7
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 4.7e-22 108.6 181 40.3
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 6.2e-22 108.2 134 48.5
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 2.0e-20 103.2 132 45.5
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 3.4e-20 102.4 92 58.7
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 4.4e-20 102.1 97 57.7
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 2.4e-18 96.3 129 48.1
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 5.4e-18 95.1 145 37.9
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 2.1e-17 93.2 94 55.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 6.0e-17 91.7 86 54.7
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 1.0e-16 90.9 143 38.5
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 1.7e-16 90.1 91 51.6
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 5.2e-13 78.6 73 52.1
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 1.2e-12 77.4 69 53.6
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 9.9e-12 74.3 100 45.0
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 5.6e-07 58.5 124 34.7


User provided reference genes

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