Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.1e-264 915.2 499 100.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 3.1e-178 629.0 491 69.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 4.0e-178 628.6 501 67.9
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 6.8e-178 627.9 499 68.3
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.9e-176 622.5 503 68.0
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.9e-175 619.8 501 66.7
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.4e-175 618.2 499 67.1
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.2e-174 617.1 500 66.8
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-174 616.7 503 67.4
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 4.6e-174 615.1 503 67.4
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 4.6e-174 615.1 504 67.3
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.0e-173 614.0 501 66.7
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.3e-173 612.8 502 66.3
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 5.1e-173 611.7 503 67.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 4.3e-172 608.6 501 66.1
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 5.6e-172 608.2 506 65.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.2e-171 607.1 500 67.0
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.2e-171 607.1 489 66.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.2e-171 607.1 501 66.1
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.6e-171 606.7 482 68.3
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.6e-171 606.7 501 66.3
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 2.1e-171 606.3 501 66.7
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 3.6e-171 605.5 500 66.2
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 8.1e-171 604.4 500 66.2
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.1e-170 604.0 501 65.5
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.1e-170 604.0 503 66.6
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.8e-170 603.2 501 66.9
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.4e-170 602.8 503 66.0
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 6.8e-170 601.3 501 65.5
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.0e-169 599.7 503 65.6
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.2e-168 596.3 502 66.1
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 3.8e-168 595.5 488 66.4
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.4e-167 592.8 501 63.9
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.6e-166 590.1 485 67.2
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 3.5e-166 589.0 500 65.2
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.0e-165 587.4 503 65.2
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.7e-165 586.6 502 63.7
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-165 585.5 521 62.4
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 8.7e-165 584.3 498 64.1
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.1e-164 583.9 501 65.7
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.5e-164 583.6 501 65.7
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.9e-164 583.2 504 65.5
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.9e-164 583.2 500 64.6
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.9e-164 583.2 497 65.2
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.5e-164 582.8 502 64.7
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 9.6e-164 580.9 500 63.4
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 9.6e-164 580.9 508 66.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-163 580.5 531 61.2
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.1e-163 579.7 509 63.3
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.1e-163 579.7 500 64.2
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.1e-163 579.7 502 64.3
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 6.2e-163 578.2 468 67.5
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-161 573.5 510 62.9
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 7.6e-161 571.2 476 66.0
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.7e-160 570.1 506 62.8
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.2e-160 569.7 490 64.5
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 2.9e-160 569.3 506 63.6
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 2.9e-160 569.3 502 62.9
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.8e-160 568.9 471 66.9
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.1e-159 567.4 501 62.7
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.9e-159 566.6 501 63.5
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 7.1e-159 564.7 502 62.7
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.2e-158 563.9 501 62.5
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.6e-158 563.5 491 64.2
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.6e-158 563.5 507 63.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.6e-158 563.5 502 61.8
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.0e-157 559.3 493 64.1
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 3.9e-157 558.9 501 62.7
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.5e-156 556.2 486 63.6
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.5e-156 556.2 495 63.2
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 4.3e-156 555.4 493 63.7
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-155 553.9 490 64.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 2.1e-155 553.1 493 62.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 6.2e-155 551.6 492 63.4
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.1e-154 550.8 491 62.5
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 9.0e-154 547.7 508 61.2
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 1.2e-153 547.4 505 61.0
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.5e-153 547.0 420 70.2
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 4.5e-153 545.4 508 62.2
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 4.5e-153 545.4 508 62.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 7.6e-153 544.7 487 61.4
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.3e-152 543.9 486 63.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.9e-152 542.7 482 62.9
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.9e-152 542.7 487 62.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.9e-151 540.0 508 61.2
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.2e-151 539.3 514 60.1
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 3.2e-151 539.3 508 61.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 3.2e-151 539.3 503 61.6
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 7.1e-151 538.1 508 61.2
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 9.3e-151 537.7 503 59.8
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 2.7e-150 536.2 525 59.0
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.0e-149 534.3 501 60.1
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.3e-149 533.9 512 61.5
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.3e-149 533.1 502 60.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 3.0e-149 532.7 480 61.0
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 4.3e-148 528.9 506 60.9
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 4.3e-148 528.9 508 61.2
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 5.6e-148 528.5 502 60.4
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.3e-147 527.3 506 60.7
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-145 520.4 493 60.9
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.3e-141 506.5 441 63.3
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.3e-141 506.5 380 70.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-138 497.7 523 56.4
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.3e-136 490.7 492 58.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.8e-136 489.2 356 73.3
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 3.5e-134 482.6 481 58.6
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.8e-130 470.3 442 59.0
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.5e-127 459.9 531 52.9
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.7e-126 456.4 408 63.2
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.0e-121 440.3 490 55.9
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.3e-120 437.6 485 54.2
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 5.0e-120 435.6 401 59.9
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.2e-119 433.0 452 58.4
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 4.1e-114 416.0 485 52.2
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 4.7e-110 402.5 393 59.8
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 9.4e-95 351.7 375 55.5
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.6e-94 349.7 488 48.2
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 5.9e-89 332.4 206 80.1
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.1e-87 328.2 324 56.2
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.2e-86 324.7 434 47.2
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 3.6e-86 323.2 380 52.6
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 3.6e-86 323.2 380 52.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.2e-85 319.3 380 50.5
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.1e-77 293.5 219 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.4e-74 284.6 395 45.6
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.2e-73 281.6 421 43.2
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 7.8e-73 278.9 253 64.4
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.4e-68 263.5 220 66.4
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.0e-56 225.3 404 37.6
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.1e-55 221.9 276 52.2
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 4.3e-55 219.9 399 38.3
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.4e-53 214.2 205 60.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.8e-46 189.9 451 33.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.9e-43 179.9 164 62.2
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.0e-41 172.9 106 75.5
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.0e-40 172.2 87 100.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.6e-38 164.9 96 82.3
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 2.4e-34 151.0 91 80.2
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 1.2e-25 122.1 132 50.8
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 2.1e-22 111.3 289 33.9
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.0e-20 104.8 185 40.5
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 5.9e-20 103.2 122 51.6
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.1e-13 80.5 97 46.4
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.5e-12 78.6 145 40.0
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.5e-10 71.2 62 58.1
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.5e-10 71.2 62 58.1
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.6e-09 68.6 70 57.1
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 4.6e-09 67.0 65 58.5
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.0e-08 65.9 62 54.8
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.7e-06 57.4 190 32.6
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 6.3e-06 56.6 34 67.6
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 8.2e-06 56.2 32 87.5


User provided reference genes

Program Settings