Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 8.5e-145 516.9 251 100.0
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.9e-84 315.1 240 66.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.1e-83 313.9 235 66.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.2e-83 312.4 219 72.6
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 9.3e-83 310.8 219 72.1
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.2e-82 310.5 211 70.6
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 5.1e-81 305.1 174 84.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.1e-80 303.9 175 80.0
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.5e-80 303.5 216 69.9
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.9e-80 303.1 216 69.9
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.5e-80 302.8 216 70.8
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.8e-79 299.3 175 78.3
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.8e-79 299.3 175 78.9
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 6.2e-79 298.1 252 61.1
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 8.1e-79 297.7 174 79.3
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.1e-78 297.4 175 78.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.8e-78 296.6 223 66.8
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.8e-78 296.6 175 79.4
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 4.0e-78 295.4 242 65.3
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 4.0e-78 295.4 246 61.4
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 4.0e-78 295.4 173 77.5
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 4.0e-78 295.4 225 65.3
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 5.3e-78 295.0 242 65.3
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.9e-78 294.7 175 77.1
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.9e-78 294.7 173 79.2
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.2e-77 293.9 173 79.8
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 2.0e-77 293.1 223 65.9
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.4e-77 292.4 191 73.8
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.4e-77 292.4 175 76.6
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.4e-77 292.4 175 76.6
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 4.5e-77 292.0 176 77.3
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.6e-77 291.2 212 66.0
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 7.6e-77 291.2 233 62.7
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.0e-76 290.8 171 80.1
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.3e-76 290.4 175 76.6
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.3e-76 290.4 179 75.4
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.3e-76 290.4 233 61.8
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 2.9e-76 289.3 175 78.3
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.8e-76 288.9 189 73.0
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 4.9e-76 288.5 173 77.5
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.4e-75 287.0 173 77.5
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.9e-75 286.6 180 73.9
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.9e-75 286.6 212 65.1
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.9e-75 286.6 212 65.1
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.9e-75 286.6 227 62.6
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 3.2e-75 285.8 177 76.3
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.2e-75 285.8 175 74.9
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 3.2e-75 285.8 171 75.4
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 3.2e-75 285.8 171 75.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 4.2e-75 285.4 237 62.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 4.2e-75 285.4 182 74.2
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 5.5e-75 285.0 220 63.6
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.1e-75 284.6 242 61.2
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 7.1e-75 284.6 241 62.2
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 9.3e-75 284.3 217 64.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.2e-74 283.9 171 76.0
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.2e-74 283.9 212 64.6
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.2e-74 283.9 173 74.0
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.2e-74 283.9 175 73.1
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.1e-74 283.1 237 62.0
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.7e-74 282.7 228 63.6
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.7e-74 282.7 175 74.3
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.5e-74 282.3 175 75.4
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 4.6e-74 282.0 174 76.4
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.6e-74 282.0 215 64.2
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 4.6e-74 282.0 175 74.9
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 4.6e-74 282.0 175 76.0
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 6.0e-74 281.6 172 75.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.9e-74 281.2 173 73.4
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.0e-73 280.8 174 75.3
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.8e-73 280.0 175 72.0
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.8e-73 280.0 175 74.3
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 5.1e-73 278.5 229 60.3
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 5.1e-73 278.5 192 68.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 5.1e-73 278.5 200 68.5
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-72 277.3 232 61.2
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.5e-72 276.9 178 72.5
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.5e-72 276.9 216 64.4
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.9e-72 276.6 209 65.6
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.9e-72 276.6 210 65.2
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.9e-72 276.6 230 62.6
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.9e-72 276.6 175 72.0
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.5e-72 276.2 174 73.6
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.5e-72 276.2 216 62.5
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 4.3e-72 275.4 173 73.4
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 5.7e-72 275.0 176 72.7
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 7.4e-72 274.6 172 74.4
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 7.4e-72 274.6 174 73.0
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 7.4e-72 274.6 174 73.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 9.6e-72 274.2 174 73.6
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 9.6e-72 274.2 174 73.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.3e-71 273.9 172 76.2
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.3e-71 273.9 174 74.1
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.6e-71 273.5 216 61.6
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 2.1e-71 273.1 176 72.7
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.1e-71 273.1 172 75.6
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.8e-71 272.7 214 62.1
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.8e-71 271.9 167 76.6
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 4.8e-71 271.9 174 73.0
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 6.2e-71 271.6 172 72.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 6.2e-71 271.6 172 71.5
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 6.2e-71 271.6 169 74.6
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.4e-70 270.4 168 72.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 3.1e-70 269.2 212 64.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 4.1e-70 268.9 205 66.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.1e-70 268.9 171 73.1
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.1e-70 268.9 171 73.1
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.3e-70 268.5 167 73.1
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 6.9e-70 268.1 209 63.6
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 9.0e-70 267.7 232 58.6
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.2e-69 267.3 174 70.7
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-69 266.9 226 58.8
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.0e-68 264.2 255 54.9
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.3e-68 263.8 192 63.5
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 2.2e-68 263.1 146 84.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 8.4e-68 261.2 171 71.9
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.2e-67 259.2 170 71.2
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 3.9e-65 252.3 236 56.4
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 8.7e-65 251.1 173 71.1
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.5e-64 250.4 202 62.4
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.5e-64 249.6 178 68.5
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.7e-64 248.4 147 77.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-62 243.8 174 67.2
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.9e-59 233.4 137 75.9
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 4.6e-58 228.8 137 75.2
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.0e-57 227.6 216 54.2
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.4e-57 227.3 170 64.1
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 5.1e-57 225.3 182 61.0
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-56 224.2 144 70.8
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 3.3e-56 222.6 243 48.6
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.1e-54 217.6 153 69.3
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 5.9e-53 211.8 170 57.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 7.7e-53 211.5 167 55.7
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 7.7e-53 211.5 215 50.7
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.7e-52 210.3 164 57.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 2.2e-52 209.9 137 69.3
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.9e-52 209.5 163 63.2
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.2e-51 206.1 175 59.4
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.1e-50 201.8 153 63.4
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.3e-48 196.1 236 44.1
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 3.7e-47 192.6 175 58.3
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 4.5e-45 185.7 111 74.8
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 5.9e-45 185.3 173 55.5
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.9e-44 183.0 173 53.2
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 2.1e-34 150.2 150 53.3
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 4.1e-30 136.0 143 51.0
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.7e-29 133.3 84 73.8
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.5e-29 132.5 93 65.6
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.0e-28 129.0 82 67.1
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.2e-27 125.9 105 60.0
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.0e-26 121.7 137 47.4
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.3e-23 114.4 211 29.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 1.7e-23 114.0 137 41.6
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.3e-20 104.4 71 69.0
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 6.6e-20 102.1 78 66.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.9e-19 100.5 69 63.8
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.9e-19 100.5 58 79.3
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-18 97.4 67 64.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-14 84.3 83 50.6
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.4e-14 84.3 52 69.2
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 2.3e-12 77.0 46 71.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.3e-11 73.2 52 61.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.6e-11 72.4 51 62.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.0e-09 66.2 39 74.4
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.5e-08 62.0 43 62.8
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 7.5e-08 62.0 35 80.0


User provided reference genes

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