Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.3e-50 201.4 105 100.0
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.0e-30 136.7 79 93.7
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 4.0e-27 124.8 92 71.7
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 4.0e-27 124.8 92 71.7
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 5.2e-27 124.4 90 73.3
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 2.6e-26 122.1 90 72.2
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.6e-26 122.1 90 75.6
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 2.6e-26 122.1 90 72.2
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.3e-26 121.7 90 72.2
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 4.4e-26 121.3 90 71.1
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 5.7e-26 120.9 92 69.6
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 5.7e-26 120.9 90 71.1
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 7.5e-26 120.6 90 71.1
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 7.5e-26 120.6 90 70.0
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 9.7e-26 120.2 90 71.1
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 9.7e-26 120.2 90 75.6
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.3e-25 119.8 90 75.6
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.3e-25 119.8 90 75.6
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.3e-25 119.8 90 75.6
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.7e-25 119.4 90 70.0
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.7e-25 119.4 90 70.0
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 2.2e-25 119.0 94 71.3
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 2.2e-25 119.0 90 70.0
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 2.2e-25 119.0 90 70.0
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 2.8e-25 118.6 90 70.0
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 2.8e-25 118.6 90 70.0
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 2.8e-25 118.6 90 70.0
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.8e-25 118.6 86 72.1
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 3.7e-25 118.2 90 73.3
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 4.8e-25 117.9 90 70.0
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 6.3e-25 117.5 90 68.9
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 6.3e-25 117.5 91 72.5
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 6.3e-25 117.5 86 73.3
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 6.3e-25 117.5 90 70.0
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 6.3e-25 117.5 90 73.3
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 6.3e-25 117.5 90 70.0
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 6.3e-25 117.5 90 68.9
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 8.2e-25 117.1 90 68.9
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 8.2e-25 117.1 90 68.9
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 8.2e-25 117.1 86 72.1
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.1e-24 116.7 90 66.7
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.1e-24 116.7 89 68.5
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.1e-24 116.7 92 67.4
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.4e-24 116.3 100 68.0
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.8e-24 115.9 91 71.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.8e-24 115.9 90 66.7
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.8e-24 115.9 90 68.9
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.8e-24 115.9 90 68.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.8e-24 115.9 90 67.8
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 2.4e-24 115.5 86 70.9
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 2.4e-24 115.5 90 67.8
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 2.4e-24 115.5 90 71.1
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 2.4e-24 115.5 80 77.5
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.1e-24 115.2 90 65.6
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.1e-24 115.2 90 65.6
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 3.1e-24 115.2 86 69.8
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 4.1e-24 114.8 88 67.0
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 4.1e-24 114.8 88 67.0
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 5.3e-24 114.4 86 70.9
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.3e-24 114.4 103 64.1
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.3e-24 114.4 86 70.9
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 5.3e-24 114.4 90 70.0
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 5.3e-24 114.4 86 70.9
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 5.3e-24 114.4 86 70.9
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 5.3e-24 114.4 91 64.8
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 5.3e-24 114.4 90 70.0
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 5.3e-24 114.4 78 75.6
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 7.0e-24 114.0 90 65.6
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 7.0e-24 114.0 84 71.4
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 9.1e-24 113.6 90 70.0
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 9.1e-24 113.6 78 75.6
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 9.1e-24 113.6 90 65.6
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.2e-23 113.2 80 76.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.2e-23 113.2 80 76.2
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.2e-23 113.2 80 76.2
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.6e-23 112.8 88 68.2
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.6e-23 112.8 88 68.2
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.6e-23 112.8 90 66.7
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.6e-23 112.8 88 67.0
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.0e-23 112.5 85 69.4
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.0e-23 112.5 85 69.4
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-23 112.5 91 69.2
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 2.0e-23 112.5 80 73.8
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.0e-23 112.5 86 69.8
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 2.0e-23 112.5 82 72.0
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 2.7e-23 112.1 88 68.2
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 2.7e-23 112.1 89 66.3
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 3.5e-23 111.7 90 70.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.5e-23 111.7 86 69.8
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 3.5e-23 111.7 80 73.8
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.5e-23 111.3 90 65.6
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 4.5e-23 111.3 80 71.2
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.0e-22 110.2 88 63.6
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.0e-22 110.2 105 57.1
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.0e-22 110.2 95 61.1
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.0e-22 110.2 88 65.9
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.3e-22 109.8 85 68.2
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 1.3e-22 109.8 88 64.8
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.7e-22 109.4 90 66.7
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.7e-22 109.4 80 70.0
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.7e-22 109.4 80 70.0
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.2e-22 109.0 85 67.1
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 2.9e-22 108.6 82 69.5
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 3.8e-22 108.2 80 70.0
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 6.5e-22 107.5 86 67.4
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 8.5e-22 107.1 92 63.0
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 5.5e-21 104.4 78 70.5
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 5.5e-21 104.4 78 70.5
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 7.2e-21 104.0 91 67.0
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 7.2e-21 104.0 90 61.1
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 9.4e-21 103.6 91 67.0
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.6e-20 102.8 91 65.9
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.6e-20 102.8 80 67.5
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.6e-20 102.8 80 67.5
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.6e-20 102.8 91 67.0
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.1e-20 102.4 92 65.2
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 2.7e-20 102.1 91 64.8
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 66.2
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 70.1
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 66.2
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 70.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 66.2
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 70.1
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 66.2
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 70.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 66.2
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.6e-20 101.7 77 70.1
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 3.6e-20 101.7 90 62.2
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 6.1e-20 100.9 66 75.8
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 8.0e-20 100.5 77 68.8
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 8.0e-20 100.5 85 63.5
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-19 99.4 77 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.2e-18 96.7 80 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.6e-18 95.5 80 61.2
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 3.4e-18 95.1 82 59.8
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 9.8e-18 93.6 77 68.8
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 9.8e-18 93.6 77 68.8
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 6.3e-17 90.9 62 71.0
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 5.9e-15 84.3 84 56.0
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 2.5e-13 79.0 63 69.8
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.2e-12 76.6 72 58.3
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 3.6e-12 75.1 50 74.0
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 7.5e-10 67.4 85 42.4
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.4e-08 63.2 89 41.6
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 3.8e-06 55.1 46 71.7


User provided reference genes

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