Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 0.0e+00 1150.2 590 100.0
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 1.6e-117 427.6 602 41.9
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 4.7e-117 426.0 599 41.4
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.0e-116 423.3 635 43.6
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 3.9e-116 422.9 591 41.6
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 8.8e-116 421.8 583 42.5
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 3.3e-115 419.9 623 40.9
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 9.7e-115 418.3 604 39.7
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.4e-113 413.7 612 41.5
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 2.4e-113 413.7 569 41.3
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 5.3e-113 412.5 600 42.0
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.6e-112 410.2 563 41.2
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.0e-111 408.3 584 44.9
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-110 404.1 623 42.9
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 2.1e-109 400.6 570 39.3
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.7e-109 400.2 609 40.9
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 4.7e-109 399.4 605 43.3
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.4e-108 397.9 607 40.5
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.3e-108 397.1 578 42.4
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 3.0e-108 396.7 572 42.5
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 5.2e-108 396.0 604 39.4
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-107 394.8 589 38.5
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.5e-107 394.4 602 43.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 5.7e-107 392.5 581 37.7
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 2.2e-106 390.6 595 38.3
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 2.2e-106 390.6 583 40.5
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 3.7e-106 389.8 607 37.6
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 1.4e-105 387.9 586 37.7
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.4e-105 387.1 599 38.4
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 5.3e-105 386.0 688 39.5
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 7.0e-105 385.6 596 39.3
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 7.0e-105 385.6 581 41.5
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.0e-104 384.0 639 40.4
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.7e-104 383.6 634 42.0
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 3.8e-103 379.8 608 41.4
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 6.5e-103 379.0 560 42.5
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.1e-102 378.3 571 43.3
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.5e-102 377.9 560 43.4
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.9e-102 377.5 450 43.3
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 5.5e-102 375.9 579 41.1
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 5.5e-102 375.9 603 37.1
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.7e-101 373.6 672 36.3
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.7e-101 373.6 575 41.4
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 2.7e-101 373.6 619 37.0
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 8.0e-101 372.1 597 40.4
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-100 371.3 591 40.3
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.8e-100 370.9 577 39.2
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.8e-100 370.9 628 39.3
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.3e-100 370.5 582 42.6
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 3.4e-99 366.7 576 37.5
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 4.4e-99 366.3 575 42.1
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 7.5e-99 365.5 573 38.9
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 9.8e-99 365.2 588 39.6
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.3e-98 364.8 468 41.0
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.7e-98 364.4 577 40.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 2.2e-98 364.0 469 40.9
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 6.3e-98 362.5 584 40.6
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.4e-97 361.3 476 43.5
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.8e-97 360.9 623 39.6
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.4e-97 360.5 578 38.8
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.4e-97 360.5 585 39.0
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 5.4e-97 359.4 586 37.5
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 5.4e-97 359.4 588 39.3
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 7.0e-97 359.0 590 37.8
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 7.0e-97 359.0 588 39.1
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 9.1e-97 358.6 644 39.8
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.2e-96 358.2 456 41.0
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 4.5e-96 356.3 581 37.7
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 5.9e-96 355.9 620 40.2
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 5.9e-96 355.9 619 40.4
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 7.7e-96 355.5 674 35.9
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 1.3e-95 354.8 587 41.9
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.3e-95 354.8 591 41.6
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.9e-95 353.6 565 40.7
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 2.9e-95 353.6 580 41.7
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 3.8e-95 353.2 572 41.1
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 5.0e-95 352.8 608 38.3
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.5e-95 352.4 592 36.5
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 8.6e-95 352.1 595 39.2
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 8.6e-95 352.1 623 40.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.1e-94 351.7 588 40.1
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 7.2e-94 349.0 563 39.8
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 9.5e-94 348.6 599 36.9
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.1e-93 347.4 586 40.3
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.3e-92 344.0 458 42.4
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 8.9e-92 342.0 566 37.1
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.2e-91 341.7 668 35.2
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 1.3e-90 338.2 605 38.3
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.4e-89 334.7 484 39.5
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-87 327.8 630 36.7
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-87 327.8 630 36.7
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.9e-87 327.0 438 41.6
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 6.6e-87 325.9 506 38.7
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.9e-86 324.3 650 37.4
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.7e-83 312.8 483 39.5
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.2e-82 310.8 437 42.8
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 2.2e-82 310.8 497 38.2
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-81 307.4 575 39.3
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.4e-81 307.4 568 35.9
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 5.4e-81 306.2 426 39.2
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 9.2e-81 305.4 458 41.9
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 2.0e-80 304.3 641 32.8
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 2.7e-80 303.9 553 36.5
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 2.7e-80 303.9 626 33.1
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 7.3e-78 295.8 473 38.1
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 8.0e-77 292.4 449 37.6
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.5e-75 288.1 574 37.5
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.4e-73 281.6 455 38.0
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 2.5e-70 270.8 351 41.6
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.4e-66 256.1 494 34.2
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.2e-64 251.9 362 42.0
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.7e-63 248.1 352 41.2
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.5e-62 245.0 313 42.2
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.5e-62 245.0 339 40.7
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.0e-60 236.9 343 39.9
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 4.6e-56 223.4 256 44.5
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 6.0e-48 196.4 316 36.4
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 3.3e-46 190.7 229 45.4
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 2.8e-45 187.6 298 37.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 4.5e-43 180.3 234 43.6
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 3.8e-42 177.2 349 33.8
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 5.4e-41 173.3 284 38.7
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.1e-40 171.4 264 40.5
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 8.7e-39 166.0 305 36.1
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.5e-38 164.5 246 40.2
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 1.3e-37 162.2 219 40.6
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.1e-36 159.1 237 40.5
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.1e-36 159.1 158 47.5
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 6.9e-36 156.4 223 40.4
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.0e-35 154.8 243 40.7
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 4.5e-35 153.7 135 53.3
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 6.4e-34 149.8 267 44.9
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 3.5e-32 144.1 218 42.7
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.5e-32 144.1 325 32.6
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.2e-27 129.0 159 45.9
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 6.5e-26 123.2 163 41.1
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 4.6e-24 117.1 144 44.4
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 6.7e-23 113.2 251 40.2
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.7e-23 112.8 175 38.9
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.5e-22 111.3 157 41.4
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 5.7e-22 110.2 185 38.9
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.7e-22 109.4 175 38.3
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 9.7e-22 109.4 90 54.4
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 4.8e-21 107.1 166 37.3
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.2e-21 106.3 175 38.3
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.0e-19 101.7 248 29.8
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-19 101.7 175 36.0
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-19 101.7 175 36.0
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-19 101.7 175 36.0
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 7.7e-19 99.8 237 43.5
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 2.2e-18 98.2 348 24.1
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.2e-18 98.2 106 48.1
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-17 95.5 88 48.9
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 3.2e-17 94.4 99 49.5
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 3.2e-17 94.4 137 40.9
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 3.2e-17 94.4 180 32.2
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.7e-16 91.3 80 53.8
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 7.4e-14 83.2 103 41.7
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 4.8e-13 80.5 103 40.8
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 8.2e-13 79.7 96 41.7
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 5.3e-12 77.0 200 42.5
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.7e-10 72.0 69 49.3
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 9.4e-09 66.2 49 67.3
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 4.7e-08 63.9 270 30.0
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 8.8e-07 59.7 55 52.7
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.6e-06 58.2 83 38.6


User provided reference genes

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