Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 2.6e-158 562.0 279 100.0
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 8.8e-74 281.2 267 56.2
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 5.7e-73 278.5 282 51.1
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 3.8e-69 265.8 270 53.3
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.6e-67 260.4 289 48.4
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 2.7e-67 259.6 272 51.1
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.0e-66 257.7 274 51.5
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 3.0e-66 256.1 293 48.8
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 3.0e-66 256.1 274 50.4
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 6.7e-66 255.0 278 48.6
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 3.3e-65 252.7 293 48.5
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 7.4e-65 251.5 272 52.2
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 1.8e-63 246.9 283 46.3
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 3.1e-63 246.1 254 48.8
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 9.1e-63 244.6 254 49.6
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 1.9e-60 236.9 280 46.8
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 9.4e-60 234.6 263 47.9
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 3.6e-59 232.6 261 47.9
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 4.7e-59 232.3 280 45.4
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 1.4e-58 230.7 280 45.0
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 1.8e-58 230.3 274 45.3
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 1.8e-58 230.3 255 49.4
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 1.8e-58 230.3 280 47.1
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 2.3e-58 229.9 281 44.5
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 2.3e-58 229.9 283 46.3
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 4.0e-58 229.2 280 44.6
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 4.0e-58 229.2 268 45.1
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 6.7e-58 228.4 260 46.5
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 1.2e-57 227.6 271 45.8
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 2.0e-57 226.9 273 45.4
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 2.6e-57 226.5 262 46.6
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 2.6e-57 226.5 271 46.1
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 1.3e-56 224.2 279 45.2
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 1.3e-56 224.2 278 43.9
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 1.7e-56 223.8 279 44.1
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 2.8e-56 223.0 254 48.0
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 4.8e-56 222.2 271 45.8
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 4.8e-56 222.2 298 41.6
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 8.2e-56 221.5 291 43.3
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 1.1e-55 221.1 278 45.0
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 2.4e-55 219.9 290 43.4
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 2.4e-55 219.9 287 46.0
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 5.3e-55 218.8 272 45.2
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 7.0e-55 218.4 258 45.7
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 9.1e-55 218.0 253 46.2
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 9.1e-55 218.0 294 41.8
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 1.2e-54 217.6 262 44.7
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.6e-54 217.2 264 45.5
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.6e-54 217.2 273 45.1
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.6e-54 217.2 250 47.2
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 2.0e-54 216.9 250 47.6
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 2.0e-54 216.9 268 43.7
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 2.0e-54 216.9 260 46.9
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 2.7e-54 216.5 250 46.4
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 2.7e-54 216.5 260 47.7
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 3.5e-54 216.1 269 45.0
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 3.5e-54 216.1 282 45.4
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 4.5e-54 215.7 273 45.1
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 4.5e-54 215.7 273 45.4
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 7.7e-54 214.9 273 45.1
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 1.3e-53 214.2 276 45.3
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 3.8e-53 212.6 272 43.8
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 1.5e-52 210.7 261 42.9
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 1.5e-52 210.7 247 46.2
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 1.9e-52 210.3 285 43.9
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 1.9e-52 210.3 275 43.6
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 2.5e-52 209.9 285 43.9
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 3.2e-52 209.5 279 43.0
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 5.5e-52 208.8 278 43.9
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 1.2e-51 207.6 282 40.4
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.6e-51 207.2 262 43.1
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 1.0e-50 204.5 248 43.1
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 2.3e-50 203.4 312 40.1
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 5.2e-50 202.2 250 44.8
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 6.8e-50 201.8 244 45.9
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 3.4e-49 199.5 254 43.3
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 4.4e-49 199.1 258 43.8
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 7.5e-49 198.4 254 42.1
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 7.5e-49 198.4 259 44.0
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 7.5e-49 198.4 281 39.1
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 9.8e-49 198.0 254 42.9
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 1.3e-48 197.6 157 62.4
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 2.2e-48 196.8 290 39.7
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 2.2e-48 196.8 256 44.1
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 2.2e-48 196.8 280 40.0
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 2.8e-48 196.4 259 43.6
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 2.8e-48 196.4 256 44.1
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 4.8e-48 195.7 271 43.2
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 6.3e-48 195.3 259 43.2
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 3.1e-47 193.0 251 43.0
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 4.1e-47 192.6 266 41.7
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 9.1e-47 191.4 150 60.0
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 1.2e-46 191.0 269 41.6
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 4.5e-46 189.1 259 41.3
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 5.9e-46 188.7 273 39.6
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 6.5e-45 185.3 284 36.3
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 5.2e-42 175.6 245 40.0
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 2.0e-41 173.7 238 41.2
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 3.4e-41 172.9 229 41.9
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 1.0e-37 161.4 262 38.2
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 8.6e-37 158.3 275 37.8
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 1.6e-35 154.1 301 36.5
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 4.7e-35 152.5 284 35.9
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 8.0e-35 151.8 207 42.0
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 1.9e-28 130.6 191 37.2
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 2.6e-25 120.2 176 34.1
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 2.2e-24 117.1 215 34.9
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 1.3e-21 107.8 213 32.9
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.8e-18 97.4 76 59.2
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 3.4e-17 93.2 191 31.4
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 2.4e-15 87.0 74 52.7
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 1.6e-14 84.3 226 31.4
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 5.1e-13 79.3 61 55.7
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 9.5e-12 75.1 139 34.5


User provided reference genes

Program Settings