Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 8.0e-57 223.4 103 100.0
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.7e-38 162.5 73 100.0
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 3.4e-23 111.7 61 73.8
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.3e-22 109.8 61 72.1
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 2.2e-22 109.0 68 67.6
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 2.9e-22 108.6 66 63.6
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 3.8e-22 108.2 72 59.7
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.8e-22 108.2 65 66.2
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 3.8e-22 108.2 61 72.1
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 4.9e-22 107.8 61 70.5
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 6.4e-22 107.5 65 64.6
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 1.1e-21 106.7 61 68.9
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 1.4e-21 106.3 61 72.1
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 1.4e-21 106.3 61 72.1
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.9e-21 105.9 65 64.6
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 1.9e-21 105.9 61 68.9
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.9e-21 105.9 63 71.4
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 1.9e-21 105.9 61 70.5
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 2.4e-21 105.5 65 66.2
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 2.4e-21 105.5 69 65.2
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 4.2e-21 104.8 70 61.4
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 7.1e-21 104.0 65 66.2
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 7.1e-21 104.0 65 63.1
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 7.1e-21 104.0 65 64.6
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 7.1e-21 104.0 62 67.7
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 7.1e-21 104.0 63 63.5
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.2e-20 103.2 65 61.5
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.2e-20 103.2 66 60.6
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 1.2e-20 103.2 66 62.1
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.6e-20 102.8 65 63.1
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 1.6e-20 102.8 65 63.1
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 1.6e-20 102.8 64 60.9
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 2.1e-20 102.4 61 68.9
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.1e-20 102.4 65 63.1
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.1e-20 102.4 65 63.1
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 2.1e-20 102.4 65 63.1
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 2.1e-20 102.4 66 60.6
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 2.7e-20 102.1 61 68.9
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 2.7e-20 102.1 67 64.2
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 3.5e-20 101.7 63 65.1
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 3.5e-20 101.7 62 64.5
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 3.5e-20 101.7 61 63.9
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.6e-20 101.3 65 61.5
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 4.6e-20 101.3 61 67.2
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 6.0e-20 100.9 69 63.8
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 6.0e-20 100.9 65 61.5
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 6.0e-20 100.9 61 65.6
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 7.8e-20 100.5 61 63.9
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 7.8e-20 100.5 65 61.5
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.0e-19 100.1 71 56.3
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.0e-19 100.1 66 59.1
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 1.0e-19 100.1 65 60.0
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.0e-19 100.1 64 60.9
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.3e-19 99.8 65 58.5
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.3e-19 99.8 65 58.5
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.3e-19 99.8 65 58.5
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 1.7e-19 99.4 71 59.2
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.7e-19 99.4 61 65.6
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 3.0e-19 98.6 61 65.6
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 3.0e-19 98.6 61 62.3
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 3.0e-19 98.6 61 65.6
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 3.9e-19 98.2 67 61.2
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 3.9e-19 98.2 69 60.9
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 3.9e-19 98.2 61 63.9
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 5.1e-19 97.8 80 52.5
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.6e-19 97.4 61 62.3
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.6e-19 97.4 61 62.3
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 6.6e-19 97.4 71 57.7
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 8.7e-19 97.1 61 67.2
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 8.7e-19 97.1 61 67.2
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 8.7e-19 97.1 61 63.9
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 8.7e-19 97.1 71 53.5
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.1e-18 96.7 61 60.7
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 1.5e-18 96.3 61 63.9
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.9e-18 95.9 63 58.7
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 3.3e-18 95.1 65 60.0
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 3.3e-18 95.1 72 58.3
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 3.3e-18 95.1 65 60.0
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 4.3e-18 94.7 61 59.0
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 4.3e-18 94.7 63 58.7
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 5.6e-18 94.4 65 60.0
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 5.6e-18 94.4 69 58.0
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 7.3e-18 94.0 77 54.5
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 9.6e-18 93.6 63 58.7
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 1.3e-17 93.2 79 50.6
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.3e-17 93.2 63 58.7
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.3e-17 93.2 63 58.7
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.3e-17 93.2 63 58.7
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.3e-17 93.2 63 58.7
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 1.3e-17 93.2 73 54.8
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 1.3e-17 93.2 63 58.7
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 1.6e-17 92.8 63 57.1
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 2.8e-17 92.0 63 60.3
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 2.8e-17 92.0 63 55.6
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 3.6e-17 91.7 61 55.7
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 3.6e-17 91.7 63 55.6
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 3.6e-17 91.7 63 55.6
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 6.2e-17 90.9 61 60.7
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 6.2e-17 90.9 64 60.9
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.1e-16 90.1 79 49.4
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.4e-16 89.7 63 55.6
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.8e-16 89.4 68 52.9
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.1e-16 88.6 69 55.1
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.1e-16 88.6 69 55.1
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 4.0e-16 88.2 69 52.2
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 4.0e-16 88.2 69 50.7
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 5.3e-16 87.8 71 52.1
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 2.0e-15 85.9 58 58.6
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 2.6e-15 85.5 53 62.3
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 4.4e-15 84.7 54 61.1
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 7.6e-15 84.0 72 48.6
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 7.6e-15 84.0 63 52.4
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 7.6e-15 84.0 53 60.4
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 9.9e-15 83.6 54 63.0
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.7e-14 82.8 63 52.4
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.7e-14 82.8 63 52.4
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.7e-14 82.8 61 54.1
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 2.2e-14 82.4 61 54.1
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 6.4e-14 80.9 59 54.2
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 9.3e-13 77.0 65 50.8
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 1.2e-12 76.6 55 52.7
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 6.0e-12 74.3 66 48.5
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 1.7e-11 72.8 60 46.7
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 6.2e-09 64.3 34 67.6
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.1e-08 62.0 61 52.5
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 6.9e-08 60.8 69 40.6
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 1.5e-07 59.7 54 50.0
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.6e-07 58.9 46 43.5
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 3.4e-07 58.5 53 37.7
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 6.4e-06 54.3 61 41.0
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 6.4e-06 54.3 65 40.0


User provided reference genes

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