Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 1.6e-98 362.8 197 100.0
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.7e-60 236.5 191 67.5
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 5.1e-60 235.0 189 68.3
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 2.5e-59 232.6 187 69.5
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 2.8e-58 229.2 189 66.7
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.4e-57 226.9 189 65.6
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.8e-57 226.5 189 67.7
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 3.1e-57 225.7 190 67.4
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 5.3e-57 224.9 192 66.1
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 5.3e-57 224.9 189 66.7
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.2e-56 223.8 191 65.4
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.5e-56 223.4 189 67.2
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.0e-56 223.0 202 64.4
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 3.4e-56 222.2 189 66.1
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 4.5e-56 221.9 189 66.1
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.5e-56 221.9 202 63.9
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.5e-56 221.9 196 63.8
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 7.6e-56 221.1 191 64.9
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 9.9e-56 220.7 189 64.0
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.3e-55 220.3 185 64.9
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 2.9e-55 219.2 189 64.6
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 3.8e-55 218.8 185 64.9
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 3.8e-55 218.8 186 66.7
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 3.8e-55 218.8 189 66.7
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 4.9e-55 218.4 185 65.4
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 4.9e-55 218.4 189 64.0
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 6.4e-55 218.0 188 65.4
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 8.4e-55 217.6 191 62.8
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 8.4e-55 217.6 192 64.6
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.1e-54 217.2 176 65.9
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.1e-54 217.2 186 64.5
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.4e-54 216.9 213 59.6
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 2.4e-54 216.1 189 64.6
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.4e-54 216.1 189 64.6
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 4.2e-54 215.3 176 65.3
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 4.2e-54 215.3 189 64.0
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 5.4e-54 214.9 196 65.3
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 7.1e-54 214.5 187 64.2
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 7.1e-54 214.5 185 65.4
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 9.3e-54 214.2 189 64.0
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.2e-53 213.8 185 65.4
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.2e-53 213.8 197 64.5
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.6e-53 213.4 191 64.4
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.6e-53 213.4 189 63.0
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.1e-53 213.0 191 62.8
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.1e-53 213.0 191 62.8
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 2.1e-53 213.0 189 63.5
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.7e-53 212.6 189 63.0
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.7e-53 212.6 190 65.8
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 2.7e-53 212.6 192 60.9
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 6.0e-53 211.5 192 59.4
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 6.0e-53 211.5 189 63.0
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 6.0e-53 211.5 183 66.1
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 6.0e-53 211.5 198 63.6
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 7.9e-53 211.1 185 63.2
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 3.0e-52 209.1 185 62.2
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 3.0e-52 209.1 183 64.5
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 3.0e-52 209.1 189 62.4
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 3.9e-52 208.8 196 63.3
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 3.9e-52 208.8 189 61.9
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.1e-52 208.4 189 61.4
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.7e-52 208.0 183 64.5
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 8.7e-52 207.6 192 59.9
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.5e-51 206.8 192 58.9
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.9e-51 206.5 193 61.7
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 4.3e-51 205.3 191 63.4
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 4.3e-51 205.3 196 57.7
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 9.6e-51 204.1 185 60.0
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.3e-50 203.8 185 60.0
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.6e-50 203.4 185 61.1
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.1e-50 203.0 187 61.5
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 2.1e-50 203.0 227 54.6
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.8e-50 201.8 185 58.9
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 4.8e-50 201.8 187 62.0
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.8e-49 199.9 189 57.7
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 4.0e-49 198.7 190 59.5
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 6.9e-49 198.0 192 60.4
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 9.0e-49 197.6 185 59.5
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.2e-48 197.2 186 57.5
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.2e-48 197.2 186 57.5
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.2e-48 197.2 186 57.5
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-48 196.4 186 57.0
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.6e-48 196.1 197 54.8
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.0e-47 194.1 193 56.5
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 2.2e-47 193.0 186 57.5
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 2.2e-47 193.0 186 57.5
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.9e-47 191.8 147 69.4
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 6.5e-47 191.4 147 69.4
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 8.4e-47 191.0 179 57.0
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 8.4e-47 191.0 179 57.0
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 7.1e-46 188.0 182 61.5
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 3.5e-45 185.7 183 57.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.3e-44 183.0 192 56.8
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.5e-43 179.5 179 58.7
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 9.6e-43 177.6 171 56.7
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-42 177.2 158 63.9
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.6e-42 176.8 189 55.0
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.6e-42 176.8 142 69.0
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.1e-41 174.1 183 56.3
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-41 174.1 142 67.6
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 2.4e-41 172.9 141 65.2
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 9.0e-41 171.0 236 47.5
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 2.6e-40 169.5 196 48.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.6e-40 167.9 191 52.4
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.0e-39 167.5 116 73.3
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.9e-39 166.0 117 70.1
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 8.4e-39 164.5 117 70.1
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.9e-38 163.3 119 68.9
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.9e-38 163.3 115 69.6
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 3.2e-38 162.5 110 72.7
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 8.7e-36 154.5 158 53.2
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 8.5e-31 137.9 140 55.7
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.4e-30 137.1 140 59.3
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.5e-30 135.2 184 50.0
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 6.7e-28 128.3 127 62.2
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 4.3e-27 125.6 104 59.6
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 9.1e-25 117.9 180 41.7
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.9e-22 110.2 82 68.3
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.2e-22 109.4 82 68.3
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 9.4e-22 107.8 82 68.3
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.4e-20 104.0 150 46.0
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 1.8e-20 103.6 161 39.8
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.0e-19 100.1 103 60.2
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.0e-19 100.1 118 50.0
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 2.6e-19 99.8 91 57.1
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 7.4e-19 98.2 126 48.4
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.7e-18 97.1 194 35.6
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 2.0e-16 90.1 154 44.8
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 3.5e-16 89.4 68 66.2
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.9e-15 86.3 113 40.7
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 1.9e-14 83.6 84 54.8
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.5e-14 83.2 140 39.3
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 4.7e-13 79.0 56 66.1
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 8.8e-12 74.7 49 73.5
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.6e-11 73.2 82 51.2
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 1.1e-06 57.8 63 57.1


User provided reference genes

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