Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 2.8e-64 248.4 126 100.0
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 6.6e-37 157.5 108 75.0
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 7.3e-36 154.1 115 69.6
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 3.6e-35 151.8 110 69.1
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 3.6e-35 151.8 110 69.1
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 8.1e-35 150.6 117 70.1
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 8.1e-35 150.6 117 70.1
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 1.8e-34 149.4 114 67.5
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 6.8e-34 147.5 118 66.1
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 6.8e-34 147.5 116 64.7
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 8.9e-34 147.1 110 68.2
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.2e-33 146.7 114 67.5
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 1.2e-33 146.7 115 67.0
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 1.5e-33 146.4 110 67.3
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 2.6e-33 145.6 116 65.5
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 4.4e-33 144.8 116 66.4
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 4.4e-33 144.8 116 66.4
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 4.4e-33 144.8 116 65.5
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 4.4e-33 144.8 116 65.5
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 7.6e-33 144.1 116 64.7
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 7.6e-33 144.1 116 65.5
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 9.9e-33 143.7 114 64.9
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 1.7e-32 142.9 108 67.6
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.7e-32 142.9 114 64.9
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 2.2e-32 142.5 109 66.1
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 2.2e-32 142.5 112 64.3
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 2.9e-32 142.1 116 63.8
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 4.9e-32 141.4 106 67.0
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 4.9e-32 141.4 117 64.1
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 6.4e-32 141.0 115 64.3
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 8.4e-32 140.6 115 65.2
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 8.4e-32 140.6 109 67.0
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 1.4e-31 139.8 121 62.0
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 1.4e-31 139.8 117 63.2
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 2.4e-31 139.0 114 63.2
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 3.2e-31 138.7 115 62.6
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 3.2e-31 138.7 116 62.1
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 4.1e-31 138.3 115 64.3
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.4e-31 137.9 109 65.1
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.4e-31 137.9 109 65.1
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 5.4e-31 137.9 109 65.1
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 5.4e-31 137.9 119 62.2
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 9.2e-31 137.1 115 62.6
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 1.2e-30 136.7 116 62.9
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 1.6e-30 136.3 115 60.9
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 1.6e-30 136.3 109 65.1
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 2.1e-30 136.0 118 62.7
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 2.1e-30 136.0 109 64.2
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 2.1e-30 136.0 108 65.7
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.7e-30 135.6 116 60.3
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.7e-30 135.6 116 60.3
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 2.7e-30 135.6 108 63.0
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 2.7e-30 135.6 114 63.2
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 2.7e-30 135.6 110 64.5
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 2.7e-30 135.6 116 60.3
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 6.0e-30 134.4 110 63.6
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 7.8e-30 134.0 108 63.9
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 7.8e-30 134.0 113 62.8
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 7.8e-30 134.0 115 61.7
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 1.3e-29 133.3 108 63.9
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.7e-29 132.9 108 63.9
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 1.7e-29 132.9 117 61.5
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 5.1e-29 131.3 115 60.0
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 6.6e-29 131.0 113 60.2
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 1.5e-28 129.8 115 58.3
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 1.9e-28 129.4 115 59.1
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 2.5e-28 129.0 109 60.6
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 3.3e-28 128.6 108 61.1
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 3.3e-28 128.6 115 59.1
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.3e-28 127.5 109 62.4
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 7.3e-28 127.5 110 60.9
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 7.3e-28 127.5 111 58.6
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 9.6e-28 127.1 109 59.6
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 1.2e-27 126.7 113 61.1
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 3.6e-27 125.2 111 60.4
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 3.6e-27 125.2 111 59.5
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 4.7e-27 124.8 111 59.5
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 6.8e-26 120.9 102 63.7
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 6.8e-26 120.9 95 66.3
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.2e-25 120.2 106 62.3
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 2.6e-25 119.0 93 63.4
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 4.4e-25 118.2 121 54.5
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 4.4e-25 118.2 116 52.6
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 3.2e-23 112.1 109 53.2
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 5.4e-23 111.3 123 48.8
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 7.1e-23 110.9 116 51.7
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 2.1e-22 109.4 115 51.3
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 6.0e-22 107.8 73 72.6
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.8e-22 107.5 115 53.9
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 4.3e-20 101.7 89 53.9
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 5.6e-20 101.3 73 69.9
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 5.6e-20 101.3 73 69.9
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 7.3e-20 100.9 74 66.2
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 9.6e-20 100.5 116 44.0
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 2.1e-19 99.4 109 49.5
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 2.8e-19 99.0 109 50.5
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 3.6e-19 98.6 109 49.5
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 4.8e-19 98.2 73 67.1
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 1.8e-18 96.3 109 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 2.4e-18 95.9 113 44.2
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 5.3e-18 94.7 85 56.5
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 9.0e-18 94.0 85 56.5
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 2.0e-17 92.8 92 53.3
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 2.6e-17 92.4 116 45.7
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 3.4e-17 92.0 85 54.1
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 2.2e-16 89.4 126 45.2
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 3.8e-16 88.6 126 45.2
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 3.8e-16 88.6 91 51.6
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 8.4e-16 87.4 119 44.5
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 1.1e-15 87.0 74 60.8
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 1.4e-15 86.7 124 44.4
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.9e-15 86.3 78 60.3
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.9e-15 86.3 79 59.5
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 3.2e-15 85.5 123 43.9
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 3.2e-15 85.5 123 43.9
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 5.4e-15 84.7 78 59.0
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 1.6e-14 83.2 116 43.1
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 2.7e-14 82.4 72 58.3
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 2.7e-14 82.4 73 61.6
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 6.0e-14 81.3 116 43.1
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 3.0e-13 79.0 113 39.8
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 3.9e-13 78.6 59 66.1
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.9e-13 78.6 59 66.1
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 8.7e-13 77.4 115 46.1
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 5.6e-12 74.7 76 46.1
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 4.8e-11 71.6 100 37.0
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 7.6e-09 64.3 46 67.4
FAN03G1360 Fragaria x ananassa HOM05D006288 ORTHO05D007416 9.3e-07 57.4 50 56.0


User provided reference genes

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