Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 2.2e-154 548.9 277 100.0
MBI16_g38083_MAGBIO Magnolia biondii HOM05D007665 ORTHO05D008293 2.0e-17 94.0 334 31.1
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 9.2e-15 85.1 292 28.8
Sabra06G0127300 Salix brachista HOM05D007665 ORTHO05D008293 9.2e-15 85.1 294 28.6
ATR0580G179 Amborella trichopoda HOM05D007665 ORTHO05D008293 1.6e-14 84.3 305 27.2
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 1.0e-13 81.6 320 26.9
VMungo1309G2535 Vigna mungo HOM05D007665 ORTHO05D008293 1.0e-13 81.6 248 29.4
HPP92_017404 Vanilla planifolia HOM05D068190 ORTHO05D025991 1.3e-13 81.3 179 35.8
Potri.006G165500 Populus trichocarpa HOM05D007665 ORTHO05D008293 5.0e-13 79.3 235 28.9
CANSAT11G1651 Cannabis sativa HOM05D007665 ORTHO05D008293 1.9e-12 77.4 293 26.6
HPP92_017422 Vanilla planifolia HOM05D068190 ORTHO05D025991 1.9e-12 77.4 179 34.6
VMungo1215G3214 Vigna mungo HOM05D007665 ORTHO05D008293 4.3e-12 76.3 301 25.2
Aqoxy7G02985 Aquilegia oxysepala HOM05D007665 ORTHO05D008293 5.6e-12 75.9 280 30.4
Duzib150G0483 Durio zibethinus HOM05D007665 ORTHO05D008293 1.2e-11 74.7 291 25.8
Glyma.13G098200 Glycine max HOM05D007665 ORTHO05D008293 1.2e-11 74.7 279 26.5
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 1.2e-11 74.7 244 29.1
Sed0009659 Sechium edule HOM05D007665 ORTHO05D008293 1.2e-11 74.7 262 27.1
Glyma.17G061500 Glycine max HOM05D007665 ORTHO05D008293 1.6e-11 74.3 278 27.7
QL11p005089 Quercus lobata HOM05D007665 ORTHO05D008293 6.1e-11 72.4 314 27.4
GSVIVG01029234001 Vitis vinifera HOM05D007665 ORTHO05D008293 6.1e-11 72.4 233 28.3
Gohir.D08G093300 Gossypium hirsutum HOM05D007665 ORTHO05D008293 8.0e-11 72.0 266 25.2
MELO3C017449.2 Cucumis melo HOM05D007665 ORTHO05D008293 2.3e-10 70.5 280 28.2
Glyma.15G163200 Glycine max HOM05D007665 ORTHO05D008293 2.3e-10 70.5 252 28.6
Atru.chr7.835 Acer truncatum HOM05D007665 ORTHO05D008293 3.0e-10 70.1 277 27.8
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 3.0e-10 70.1 266 30.5
Actinidia01304 Actinidia chinensis HOM05D007665 ORTHO05D008293 6.8e-10 68.9 265 30.2
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 8.9e-10 68.6 226 28.8
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.2e-09 68.2 166 33.7
Lalb_Chr18g0052461 Lupinus albus HOM05D007665 ORTHO05D008293 1.2e-09 68.2 231 27.7
Gorai.009G003800 Gossypium raimondii HOM05D007665 ORTHO05D008293 1.5e-09 67.8 254 27.2
CsaV3_1G031740 Cucumis sativus L. HOM05D007665 ORTHO05D008293 2.6e-09 67.0 274 26.6
Phvul.009G238500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 3.4e-09 66.6 243 28.0
Gohir.A05G003700 Gossypium hirsutum HOM05D007665 ORTHO05D008293 4.4e-09 66.2 253 27.3
Gorai.004G098900 Gossypium raimondii HOM05D007665 ORTHO05D008293 4.4e-09 66.2 262 24.4
Sed0009111 Sechium edule HOM05D007665 ORTHO05D008293 4.4e-09 66.2 231 31.6
Cpa.g.c26900 Carica papaya HOM05D007665 ORTHO05D008293 5.7e-09 65.9 295 28.8
Gohir.A08G083600 Gossypium hirsutum HOM05D007665 ORTHO05D008293 5.7e-09 65.9 240 27.9
TWI34G1272 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 5.7e-09 65.9 305 26.9
Ciclev10009102m.g Citrus clementina HOM05D007665 ORTHO05D008293 7.5e-09 65.5 259 31.7
Phvul.003G143500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 7.5e-09 65.5 184 28.3
Glyma.09G056900 Glycine max HOM05D007665 ORTHO05D008293 9.8e-09 65.1 247 27.1
Rhsim01G0002100 Rhododendron simsii HOM05D007665 ORTHO05D008293 1.3e-08 64.7 306 27.1
MD16G1253900 Malus domestica HOM05D007665 ORTHO05D008293 1.7e-08 64.3 257 26.8
Prupe.1G081700 Prunus persica HOM05D007665 ORTHO05D008293 1.7e-08 64.3 140 33.6
Gohir.D05G004100 Gossypium hirsutum HOM05D007665 ORTHO05D008293 3.7e-08 63.2 201 29.9
ClCG06G013480 Citrullus lanatus HOM05D007665 ORTHO05D008293 4.9e-08 62.8 268 26.5
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 4.9e-08 62.8 68 44.1
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 6.4e-08 62.4 52 55.8
SEGI_07957 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 6.4e-08 62.4 60 55.0
COL.COLO4_35626 Corchorus olitorius HOM05D007665 ORTHO05D008293 8.3e-08 62.0 300 27.7
SEGI_16187 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 8.3e-08 62.0 59 55.9
Haze_21953 Corylus avellana HOM05D007665 ORTHO05D008293 1.1e-07 61.6 133 35.3
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.1e-07 61.6 225 28.4
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.4e-07 61.2 52 55.8
Medtr2g036740 Medicago truncatula HOM05D007665 ORTHO05D008293 1.4e-07 61.2 242 27.3
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.4e-07 61.2 81 40.7
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.4e-07 61.2 81 40.7
CDE04G1089 Ceratophyllum demersum HOM05D001536 ORTHO05D001442 1.8e-07 60.8 114 37.7
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 2.4e-07 60.5 45 60.0
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 2.4e-07 60.5 215 28.8
TPR.G9242 Trifolium pratense HOM05D007665 ORTHO05D008293 2.4e-07 60.5 250 28.0
MD13G1247000 Malus domestica HOM05D007665 ORTHO05D008293 3.2e-07 60.1 138 33.3
Manes.06G022200 Manihot esculenta HOM05D007665 ORTHO05D008293 3.2e-07 60.1 257 26.8
Sabra18G0077500 Salix brachista HOM05D007665 ORTHO05D008293 3.2e-07 60.1 237 28.7
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 4.1e-07 59.7 51 51.0
MSTRG.6233 Avicennia marina HOM05D007665 ORTHO05D008293 4.1e-07 59.7 230 27.8
Ca_21241_v3 Cicer arietinum L. HOM05D007665 ORTHO05D008293 4.1e-07 59.7 184 29.3
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.1e-07 59.7 61 49.2
SEGI_03234 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 4.1e-07 59.7 50 62.0
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 5.4e-07 59.3 237 27.4
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 5.4e-07 59.3 52 53.8
CiPaw.07G194500 Carya illinoinensis HOM05D007665 ORTHO05D008293 5.4e-07 59.3 277 27.4
ATR0111G010 Amborella trichopoda HOM05D001536 ORTHO05D001442 7.0e-07 58.9 43 65.1
arahy.Tifrunner.gnm1.ann1.38WMVK Arachis hypogaea HOM05D007665 ORTHO05D008293 7.0e-07 58.9 282 26.2
arahy.Tifrunner.gnm1.ann1.6P3KM7 Arachis hypogaea HOM05D007665 ORTHO05D008293 7.0e-07 58.9 73 46.6
arahy.Tifrunner.gnm1.ann1.HIJU8F Arachis hypogaea HOM05D007665 ORTHO05D008293 7.0e-07 58.9 282 26.2
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 7.0e-07 58.9 46 58.7
Gohir.A08G019000 Gossypium hirsutum HOM05D007665 ORTHO05D008293 7.0e-07 58.9 185 32.4
Nn6g34027 Nelumbo nucifera HOM05D007929 ORTHO05D008690 7.0e-07 58.9 113 38.1
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 7.0e-07 58.9 147 33.3
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 9.2e-07 58.5 52 53.8
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 9.2e-07 58.5 52 53.8
arahy.Tifrunner.gnm1.ann1.D7NBKG Arachis hypogaea HOM05D007665 ORTHO05D008293 9.2e-07 58.5 103 39.8
CiPaw.08G034700 Carya illinoinensis HOM05D007665 ORTHO05D008293 9.2e-07 58.5 196 29.6
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 9.2e-07 58.5 44 61.4
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 9.2e-07 58.5 45 55.6
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 9.2e-07 58.5 46 58.7
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-06 58.2 49 55.1
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-06 58.2 46 58.7
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-06 58.2 46 58.7
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-06 58.2 49 55.1
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-06 58.2 46 58.7
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.2e-06 58.2 49 55.1
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.2e-06 58.2 46 58.7
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.2e-06 58.2 46 58.7
Hma1.2p1_1303F.1_g274400 Hydrangea macrophylla HOM05D007665 ORTHO05D008293 1.2e-06 58.2 91 40.7
Os06g0694400 Oryza sativa ssp. japonica HOM05D024844 ORTHO05D025991 1.2e-06 58.2 166 30.7
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 1.2e-06 58.2 42 64.3
Psat1g146200 Pisum sativum HOM05D007665 ORTHO05D008293 1.2e-06 58.2 73 46.6
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.2e-06 58.2 233 27.0
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.2e-06 58.2 224 26.8
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 1.2e-06 58.2 59 54.2
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.6e-06 57.8 52 55.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.6e-06 57.8 237 27.4
Manes.14G158020 Manihot esculenta HOM05D007665 ORTHO05D008293 1.6e-06 57.8 246 26.0
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.6e-06 57.8 45 57.8
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.6e-06 57.8 47 57.4
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.6e-06 57.8 45 57.8
PGR102G1162 Punica granatum HOM05D001536 ORTHO05D001442 1.6e-06 57.8 53 49.1
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 1.6e-06 57.8 226 26.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.6e-06 57.8 50 54.0
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 2.0e-06 57.4 185 30.3
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 2.0e-06 57.4 45 57.8
Nn3g17370 Nelumbo nucifera HOM05D001536 ORTHO05D001442 2.0e-06 57.4 75 45.3
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 2.0e-06 57.4 47 57.4
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 2.7e-06 57.0 48 54.2
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.7e-06 57.0 173 27.7
CDE05G1157 Ceratophyllum demersum HOM05D007665 ORTHO05D008293 2.7e-06 57.0 245 26.5
Solyc07g017870.2 Solanum lycopersicum HOM05D023392 ORTHO05D008293 2.7e-06 57.0 219 28.3
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.7e-06 57.0 47 57.4
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 3.5e-06 56.6 49 55.1
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 3.5e-06 56.6 49 55.1
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 3.5e-06 56.6 49 55.1
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 3.5e-06 56.6 49 55.1
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 3.5e-06 56.6 49 55.1
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 3.5e-06 56.6 49 55.1
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 3.5e-06 56.6 49 55.1
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 3.5e-06 56.6 49 55.1
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.5e-06 56.6 228 26.3
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 3.5e-06 56.6 45 60.0
FvH4_4g07760 Fragaria vesca HOM05D007665 ORTHO05D008293 3.5e-06 56.6 305 27.2
FAN12G1950 Fragaria x ananassa HOM05D007665 ORTHO05D008293 3.5e-06 56.6 305 27.2
Lj6g0002099 Lotus japonicus HOM05D007665 ORTHO05D008293 3.5e-06 56.6 197 29.4
Lalb_Chr12g0199491 Lupinus albus HOM05D007665 ORTHO05D008293 3.5e-06 56.6 209 27.8
TPR.G5363 Trifolium pratense HOM05D007665 ORTHO05D008293 3.5e-06 56.6 103 35.9
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.5e-06 56.6 45 57.8
TAR374G1634 Trochodendron aralioides HOM05D007929 ORTHO05D008690 3.5e-06 56.6 58 53.4
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.6e-06 56.2 42 59.5
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.6e-06 56.2 42 61.9
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.6e-06 56.2 46 56.5
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 4.6e-06 56.2 46 58.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.9e-06 55.8 42 61.9
Gorai.004G027000 Gossypium raimondii HOM05D007665 ORTHO05D008293 5.9e-06 55.8 164 32.3
Nn1g01073 Nelumbo nucifera HOM05D007929 ORTHO05D008690 5.9e-06 55.8 62 48.4
Os12g0577800 Oryza sativa ssp. japonica HOM05D001536 ORTHO05D001442 5.9e-06 55.8 116 32.8
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 7.8e-06 55.5 43 58.1
DCAR_009919 Daucus carota HOM05D007665 ORTHO05D008293 7.8e-06 55.5 229 27.9
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 7.8e-06 55.5 48 52.1
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 7.8e-06 55.5 42 61.9
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 7.8e-06 55.5 45 53.3
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 7.8e-06 55.5 49 51.0
TWI32G1073 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 7.8e-06 55.5 273 27.5
HPP92_017528 Vanilla planifolia HOM05D001536 ORTHO05D001442 7.8e-06 55.5 74 41.9


User provided reference genes

Program Settings