Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 3.6e-158 561.6 296 100.0
HPP92_010344 Vanilla planifolia HOM05D045913 ORTHO05D004149 1.4e-24 117.9 223 34.5
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.8e-24 117.5 201 38.3
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 7.0e-21 105.5 215 38.6
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 5.5e-18 95.9 207 34.3
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 8.8e-16 88.6 211 33.6
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 4.4e-15 86.3 270 30.0
Os08g0270800 Oryza sativa ssp. japonica HOM05D037779 ORTHO05D004149 1.7e-14 84.3 208 33.2
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 1.7e-14 84.3 265 33.2
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 6.3e-14 82.4 266 27.1
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 8.3e-14 82.0 262 28.6
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 1.1e-13 81.6 269 28.6
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 1.1e-13 81.6 245 29.8
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.8e-13 80.9 184 32.6
Zm00001eb412280 Zea mays HOM05D037779 ORTHO05D004149 1.8e-13 80.9 187 33.7
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 2.4e-13 80.5 245 31.0
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 2.4e-13 80.5 246 31.3
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 3.1e-13 80.1 242 28.5
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 3.1e-13 80.1 275 29.5
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 5.4e-13 79.3 267 28.5
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 7.0e-13 79.0 242 28.5
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 9.2e-13 78.6 277 28.2
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 1.2e-12 78.2 267 29.6
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 1.2e-12 78.2 239 28.9
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 2.0e-12 77.4 206 34.5
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 2.0e-12 77.4 266 28.9
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 2.7e-12 77.0 203 31.0
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 2.7e-12 77.0 267 29.6
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 2.7e-12 77.0 258 29.5
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 3.5e-12 76.6 186 34.4
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 4.5e-12 76.3 189 33.9
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 4.5e-12 76.3 272 27.9
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 4.5e-12 76.3 222 32.9
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 5.9e-12 75.9 83 48.2
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 5.9e-12 75.9 251 29.5
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 7.8e-12 75.5 186 33.9
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 7.8e-12 75.5 261 26.1
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 1.7e-11 74.3 247 29.6
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 1.7e-11 74.3 213 31.0
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 1.7e-11 74.3 266 27.4
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 1.7e-11 74.3 268 26.1
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 2.3e-11 73.9 190 31.6
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 2.3e-11 73.9 233 29.6
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 3.8e-11 73.2 201 34.8
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 3.8e-11 73.2 190 33.2
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 3.8e-11 73.2 267 29.2
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 5.0e-11 72.8 210 30.5
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 6.6e-11 72.4 201 34.8
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 6.6e-11 72.4 201 34.8
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 6.6e-11 72.4 242 28.5
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 6.6e-11 72.4 269 27.1
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 8.6e-11 72.0 213 30.5
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 8.6e-11 72.0 82 45.1
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 1.1e-10 71.6 197 33.5
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 1.1e-10 71.6 199 32.7
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.1e-10 71.6 232 31.9
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 1.1e-10 71.6 289 27.0
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 1.5e-10 71.2 316 25.9
Duzib187G1399 Durio zibethinus HOM05D008192 ORTHO05D010301 1.5e-10 71.2 194 34.0
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.5e-10 71.2 268 27.2
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 1.5e-10 71.2 251 30.7
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 1.9e-10 70.9 261 29.1
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 1.9e-10 70.9 261 29.1
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 1.9e-10 70.9 267 29.2
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 1.9e-10 70.9 267 28.5
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.9e-10 70.9 243 27.6
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 3.3e-10 70.1 245 27.8
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 4.3e-10 69.7 245 29.0
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 4.3e-10 69.7 266 27.4
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 5.6e-10 69.3 207 34.3
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 5.6e-10 69.3 204 33.3
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 5.6e-10 69.3 260 29.6
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 7.3e-10 68.9 201 35.3
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 7.3e-10 68.9 204 33.3
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 7.3e-10 68.9 247 27.9
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 9.5e-10 68.6 97 43.3
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 9.5e-10 68.6 97 43.3
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 9.5e-10 68.6 235 28.5
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.2e-09 68.2 263 28.1
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 1.2e-09 68.2 261 27.2
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 1.6e-09 67.8 196 32.7
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 1.6e-09 67.8 196 32.7
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 1.6e-09 67.8 261 29.1
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 1.6e-09 67.8 245 27.8
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 1.6e-09 67.8 293 29.7
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.6e-09 67.8 269 27.5
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 1.6e-09 67.8 304 26.0
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 1.6e-09 67.8 318 23.9
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 1.6e-09 67.8 247 27.9
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 2.1e-09 67.4 198 30.3
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 2.1e-09 67.4 191 30.9
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.8e-09 67.0 236 30.1
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.8e-09 67.0 236 30.1
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 4.7e-09 66.2 246 26.4
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 6.1e-09 65.9 257 29.2
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 1.0e-08 65.1 307 25.4
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 1.4e-08 64.7 234 28.2
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 1.4e-08 64.7 309 25.9
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 1.4e-08 64.7 67 52.2
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 1.8e-08 64.3 214 31.8
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 1.8e-08 64.3 301 24.9
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 1.8e-08 64.3 245 25.3
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 1.8e-08 64.3 182 31.9
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.8e-08 64.3 247 25.9
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.8e-08 64.3 247 25.9
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.3e-08 63.9 241 25.3
Zm00001eb313030 Zea mays HOM05D033133 ORTHO05D037177 2.3e-08 63.9 205 32.7
CsaV3_1G029050 Cucumis sativus L. HOM05D003759 ORTHO05D004149 3.0e-08 63.5 72 47.2
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 3.0e-08 63.5 305 25.9
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 4.0e-08 63.2 269 30.1
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 4.0e-08 63.2 247 25.9
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 6.8e-08 62.4 263 25.9
BraA03t10564Z Brassica rapa HOM05D003759 ORTHO05D004149 8.9e-08 62.0 210 28.6
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 8.9e-08 62.0 310 25.5
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 8.9e-08 62.0 258 25.6
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 8.9e-08 62.0 252 23.8
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 8.9e-08 62.0 295 24.4
CsaV3_2G007570 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.2e-07 61.6 85 36.5
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.2e-07 61.6 241 24.9
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 1.5e-07 61.2 87 40.2
Os09g0421500 Oryza sativa ssp. japonica HOM05D033133 ORTHO05D037177 1.5e-07 61.2 169 33.1
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 2.0e-07 60.8 195 28.2
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 2.0e-07 60.8 195 28.2
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 2.0e-07 60.8 195 28.2
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 2.0e-07 60.8 298 25.8
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.0e-07 60.8 52 57.7
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.0e-07 60.8 52 57.7
Thecc.09G015000 Theobroma cacao HOM05D008192 ORTHO05D010301 2.0e-07 60.8 194 35.1
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.6e-07 60.5 310 23.5
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 2.6e-07 60.5 246 24.8
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 3.4e-07 60.1 269 27.1
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 4.4e-07 59.7 259 25.9
Duzib168G1894 Durio zibethinus HOM05D003759 ORTHO05D004149 4.4e-07 59.7 66 43.9
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 4.4e-07 59.7 273 29.7
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 5.7e-07 59.3 215 29.8
Gohir.A06G102100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 5.7e-07 59.3 184 33.2
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 5.7e-07 59.3 306 25.8
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 5.7e-07 59.3 192 27.1
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 7.5e-07 58.9 214 25.7
Dinv41365 Davidia involucrata HOM05D003759 ORTHO05D004149 7.5e-07 58.9 58 51.7
Nn8g39944 Nelumbo nucifera HOM05D003759 ORTHO05D004149 7.5e-07 58.9 85 37.6
Sed0021485 Sechium edule HOM05D003759 ORTHO05D004149 7.5e-07 58.9 213 31.0
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 7.5e-07 58.9 293 24.6
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 9.8e-07 58.5 241 24.1
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 9.8e-07 58.5 80 42.5
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 1.3e-06 58.2 184 29.9
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 1.3e-06 58.2 131 35.1
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 1.3e-06 58.2 194 28.4
unitig_0.g2686 Utricularia gibba HOM05D003759 ORTHO05D004149 1.3e-06 58.2 248 28.2
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.7e-06 57.8 303 26.4
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.2e-06 57.4 149 36.2
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 2.2e-06 57.4 189 28.6
Peaxi162Scf00401g00425 Petunia axillaris HOM05D003759 ORTHO05D004149 2.9e-06 57.0 87 37.9
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 4.9e-06 56.2 289 27.3
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 4.9e-06 56.2 311 24.8
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 4.9e-06 56.2 307 25.7
Gohir.A05G060200 Gossypium hirsutum HOM05D008192 ORTHO05D010301 8.3e-06 55.5 179 30.7


User provided reference genes

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