Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.3e-146 523.1 276 100.0
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 9.6e-65 251.1 222 62.2
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 5.8e-62 241.9 214 63.6
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 1.7e-61 240.4 221 60.2
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 1.1e-60 237.7 222 62.2
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 2.4e-60 236.5 190 63.7
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 1.6e-59 233.8 214 62.6
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 2.1e-59 233.4 222 59.0
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 7.9e-59 231.5 222 58.1
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 1.0e-58 231.1 245 55.1
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 1.0e-58 231.1 197 61.4
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 1.0e-58 231.1 197 61.4
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 1.3e-58 230.7 221 58.4
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.8e-58 230.3 222 59.5
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 2.3e-58 229.9 211 60.2
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 2.3e-58 229.9 208 60.6
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 2.3e-58 229.9 215 60.9
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.0e-58 229.6 215 60.5
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.0e-58 229.6 215 60.5
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 3.0e-58 229.6 215 60.5
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 3.9e-58 229.2 222 60.4
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 5.1e-58 228.8 222 59.9
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 8.7e-58 228.0 213 60.1
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 8.7e-58 228.0 222 59.0
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 8.7e-58 228.0 196 61.7
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 1.5e-57 227.3 214 59.3
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 1.9e-57 226.9 213 60.1
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 2.5e-57 226.5 217 59.0
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 2.5e-57 226.5 227 57.3
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 2.5e-57 226.5 194 61.9
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 3.3e-57 226.1 197 63.5
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.3e-57 225.7 199 60.3
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 5.6e-57 225.3 218 58.7
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 5.6e-57 225.3 218 58.7
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 1.3e-56 224.2 217 58.1
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.3e-56 224.2 215 58.6
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 2.1e-56 223.4 235 54.9
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 2.8e-56 223.0 229 56.3
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 2.8e-56 223.0 196 61.7
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 2.8e-56 223.0 196 61.7
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 2.8e-56 223.0 196 61.7
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 4.8e-56 222.2 222 57.7
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 1.4e-55 220.7 197 60.9
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 2.4e-55 219.9 219 55.7
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 3.1e-55 219.5 222 56.8
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 4.0e-55 219.2 181 61.9
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 6.9e-55 218.4 203 60.1
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 9.0e-55 218.0 222 57.7
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.5e-54 217.2 183 62.8
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.0e-54 216.9 214 57.5
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 2.0e-54 216.9 208 58.2
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 2.0e-54 216.9 201 59.7
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 3.4e-54 216.1 215 56.7
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 4.5e-54 215.7 218 56.0
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 4.5e-54 215.7 212 56.6
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 1.7e-53 213.8 208 54.3
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 2.2e-53 213.4 211 56.4
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.9e-53 213.0 189 60.3
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 8.4e-53 211.5 188 58.5
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.4e-52 210.7 188 58.5
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.4e-52 210.7 195 59.0
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 1.9e-52 210.3 194 59.3
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 1.9e-52 210.3 214 56.1
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 2.5e-52 209.9 198 57.6
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 5.5e-52 208.8 177 59.9
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.6e-51 207.2 197 58.4
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 1.6e-51 207.2 215 57.2
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 2.7e-51 206.5 212 54.7
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 2.7e-51 206.5 212 54.7
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 2.7e-51 206.5 212 54.7
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 2.7e-51 206.5 219 55.3
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 3.5e-51 206.1 203 57.1
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 6.0e-51 205.3 194 56.7
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 6.0e-51 205.3 236 52.1
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 6.0e-51 205.3 204 56.9
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.0e-50 204.5 201 55.7
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 1.3e-50 204.1 221 50.7
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 1.3e-50 204.1 218 50.9
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 2.3e-50 203.4 212 53.8
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.9e-50 202.6 214 54.2
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 5.1e-50 202.2 215 54.4
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 6.7e-50 201.8 208 55.3
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 6.7e-50 201.8 197 58.4
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 8.7e-50 201.4 213 54.5
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 1.9e-49 200.3 225 51.6
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.5e-49 199.9 197 56.3
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.5e-49 199.9 197 56.3
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 3.3e-49 199.5 207 55.1
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 4.3e-49 199.1 195 53.8
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 5.7e-49 198.7 290 45.9
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 7.4e-49 198.4 189 57.7
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 9.7e-49 198.0 184 57.1
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 1.6e-48 197.2 209 55.0
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.2e-48 196.8 177 56.5
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 2.8e-48 196.4 173 60.1
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 4.8e-48 195.7 228 53.1
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 4.8e-48 195.7 190 57.4
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 4.8e-48 195.7 202 53.5
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 8.2e-48 194.9 208 54.8
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 8.2e-48 194.9 208 54.8
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 8.2e-48 194.9 208 54.8
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 1.4e-47 194.1 221 53.4
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 1.8e-47 193.7 203 53.7
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.8e-47 193.7 241 49.8
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 3.1e-47 193.0 256 48.4
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 4.1e-47 192.6 173 61.8
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 1.2e-46 191.0 208 57.2
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 1.5e-46 190.7 221 52.5
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 5.9e-46 188.7 192 54.7
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 1.0e-45 188.0 230 50.0
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 1.3e-45 187.6 257 48.2
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 1.7e-45 187.2 242 48.8
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 1.7e-45 187.2 181 59.1
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.9e-44 183.7 135 68.1
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 4.2e-44 182.6 148 65.5
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 9.4e-44 181.4 213 50.7
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 1.8e-42 177.2 222 50.9
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 9.7e-41 171.4 190 51.1
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 6.3e-40 168.7 183 53.0
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 4.1e-39 166.0 207 45.9
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 2.5e-36 156.8 215 46.0
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.1e-35 153.7 221 43.4
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 2.7e-35 153.3 206 46.6
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 3.6e-35 152.9 223 43.5
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 7.9e-35 151.8 225 43.6
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 7.9e-35 151.8 206 45.1
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.3e-33 146.4 115 63.5
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 8.2e-32 141.7 188 41.5
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 1.4e-31 141.0 213 46.5
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.2e-30 137.9 102 65.7
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 1.7e-29 134.0 112 62.5
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 2.1e-27 127.1 102 68.6
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 8.8e-26 121.7 68 88.2
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 2.0e-25 120.6 114 50.0
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 8.2e-24 115.2 166 40.4
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 5.3e-23 112.5 150 42.7
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 2.1e-19 100.5 85 58.8
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 3.8e-13 79.7 169 30.2
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 5.0e-13 79.3 76 52.6
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 4.2e-12 76.3 107 46.7
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 7.2e-12 75.5 184 36.4
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 2.3e-10 70.5 76 52.6
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 4.0e-10 69.7 150 32.0
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.6e-09 67.0 74 54.1
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 4.4e-09 66.2 98 42.9


User provided reference genes

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