Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018319 Vanilla planifolia HOM05D000172 ORTHO05D004529 5.0e-105 384.4 191 100.0
HPP92_018317 Vanilla planifolia HOM05D000172 ORTHO05D004529 7.1e-67 257.7 199 72.4
HPP92_018301 Vanilla planifolia HOM05D000172 ORTHO05D004529 1.1e-64 250.4 200 69.5
Cfa014306 Carpinus fangiana HOM05D000172 ORTHO05D004529 1.3e-52 210.3 199 57.8
Glyma.02G266900 Glycine max HOM05D000172 ORTHO05D004529 2.2e-52 209.5 199 57.3
Hma1.2p1_0445F.1_g154200 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 2.9e-52 209.1 199 58.3
Medtr5g084930 Medicago truncatula HOM05D000172 ORTHO05D004529 3.8e-52 208.8 201 57.2
Haze_12753 Corylus avellana HOM05D000172 ORTHO05D004529 8.4e-52 207.6 199 56.8
Aqoxy1G02876 Aquilegia oxysepala HOM05D000172 ORTHO05D004529 1.9e-51 206.5 199 57.3
Hma1.2p1_2840F.1_g329340 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 2.5e-51 206.1 199 57.8
Psat2g026680 Pisum sativum HOM05D000172 ORTHO05D004529 3.2e-51 205.7 199 56.3
Rhsim06G0169300 Rhododendron simsii HOM05D000172 ORTHO05D004529 3.2e-51 205.7 199 57.3
CiPaw.03G153600 Carya illinoinensis HOM05D000172 ORTHO05D004529 4.2e-51 205.3 200 57.5
SGA_v2.0_scaffold49G18360 Striga asiatica HOM05D000172 ORTHO05D004529 4.2e-51 205.3 200 56.5
MSTRG.14865 Avicennia marina HOM05D000172 ORTHO05D004529 9.3e-51 204.1 199 56.8
CiPaw.04G108900 Carya illinoinensis HOM05D000172 ORTHO05D004529 1.2e-50 203.8 198 57.6
Glyma.14G050600 Glycine max HOM05D000172 ORTHO05D004529 1.2e-50 203.8 199 57.3
Ca_06051_v3 Cicer arietinum L. HOM05D000172 ORTHO05D004529 6.0e-50 201.4 199 55.3
Duzib133G0852 Durio zibethinus HOM05D000172 ORTHO05D004529 7.9e-50 201.1 200 55.5
VMungo0647G1522 Vigna mungo HOM05D000172 ORTHO05D004529 7.9e-50 201.1 199 55.3
LjContig00029g0026614 Lotus japonicus HOM05D000172 ORTHO05D004529 1.0e-49 200.7 200 55.5
MD17G1107800 Malus domestica HOM05D000172 ORTHO05D004529 1.0e-49 200.7 199 54.8
QL08p030114 Quercus lobata HOM05D000172 ORTHO05D004529 1.3e-49 200.3 198 55.6
Atru.chr6.3272 Acer truncatum HOM05D000172 ORTHO05D004529 1.8e-49 199.9 200 55.0
Sed0015934 Sechium edule HOM05D000172 ORTHO05D004529 1.8e-49 199.9 202 55.4
arahy.Tifrunner.gnm1.ann1.0YR97U Arachis hypogaea HOM05D000172 ORTHO05D004529 3.0e-49 199.1 199 54.8
MSTRG.14127 Avicennia marina HOM05D000172 ORTHO05D004529 3.0e-49 199.1 199 56.8
Phvul.008G215100 Phaseolus vulgaris HOM05D000172 ORTHO05D004529 3.0e-49 199.1 199 55.3
Potri.014G160000 Populus trichocarpa HOM05D000172 ORTHO05D004529 3.0e-49 199.1 199 54.8
COL.COLO4_07252 Corchorus olitorius HOM05D000172 ORTHO05D004529 5.1e-49 198.4 212 53.8
CSS0045460 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 6.7e-49 198.0 199 55.8
CsaV3_6G015540 Cucumis sativus L. HOM05D000172 ORTHO05D004529 6.7e-49 198.0 202 56.9
arahy.Tifrunner.gnm1.ann1.0SG038 Arachis hypogaea HOM05D000172 ORTHO05D004529 1.1e-48 197.2 199 54.3
CANSAT64G0513 Cannabis sativa HOM05D000172 ORTHO05D004529 1.1e-48 197.2 200 55.0
RcHm_v2.0_Chr2g0157821 Rosa chinensis HOM05D000172 ORTHO05D004529 1.1e-48 197.2 199 54.3
Sabra14G0121700 Salix brachista HOM05D000172 ORTHO05D004529 1.1e-48 197.2 199 54.3
Manes.12G068300 Manihot esculenta HOM05D000172 ORTHO05D004529 1.5e-48 196.8 199 54.3
Lalb_Chr04g0250171 Lupinus albus HOM05D000172 ORTHO05D004529 1.9e-48 196.4 199 52.3
MBI16_g26178_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D004529 2.5e-48 196.1 190 55.3
Nn1g07319 Nelumbo nucifera HOM05D000172 ORTHO05D004529 2.5e-48 196.1 199 55.3
Thecc.01G183900 Theobroma cacao HOM05D000172 ORTHO05D004529 2.5e-48 196.1 199 55.8
vmacro12149 Vaccinium macrocarpon HOM05D000172 ORTHO05D004529 2.5e-48 196.1 199 55.8
TAR624G0902 Trochodendron aralioides HOM05D000172 ORTHO05D004529 3.3e-48 195.7 199 55.3
Eucgr.K00732 Eucalyptus grandis HOM05D000172 ORTHO05D004529 4.3e-48 195.3 199 55.8
PGSC0003DMG400000661 Solanum tuberosum HOM05D000172 ORTHO05D004529 4.3e-48 195.3 200 55.5
FvH4_6g41940 Fragaria vesca HOM05D000172 ORTHO05D004529 5.7e-48 194.9 198 53.5
FAN14G3661 Fragaria x ananassa HOM05D000172 ORTHO05D004529 5.7e-48 194.9 198 53.5
Oeu054513.2 Olea europaea HOM05D000172 ORTHO05D004529 5.7e-48 194.9 199 54.8
Prupe.3G208600 Prunus persica HOM05D000172 ORTHO05D004529 5.7e-48 194.9 201 54.7
ATR1128G012 Amborella trichopoda HOM05D000172 ORTHO05D004529 7.4e-48 194.5 201 52.7
ClCG02G018150 Citrullus lanatus HOM05D000172 ORTHO05D004529 7.4e-48 194.5 201 55.7
MELO3C019722.2 Cucumis melo HOM05D000172 ORTHO05D004529 7.4e-48 194.5 191 57.1
FAN09G3260 Fragaria x ananassa HOM05D000172 ORTHO05D004529 1.3e-47 193.7 198 53.5
Solyc07g049450.3 Solanum lycopersicum HOM05D000172 ORTHO05D004529 1.6e-47 193.4 200 55.0
Zm00001eb314620 Zea mays HOM05D000172 ORTHO05D004529 1.6e-47 193.4 200 53.5
Duzib138G0538 Durio zibethinus HOM05D000172 ORTHO05D004529 2.1e-47 193.0 200 56.0
Ah.14g083060 Amaranthus hybridus HOM05D000172 ORTHO05D004529 2.8e-47 192.6 197 55.3
Cpa.g.sc132.36 Carica papaya HOM05D000172 ORTHO05D004529 4.8e-47 191.8 200 54.5
FAN02G0745 Fragaria x ananassa HOM05D000172 ORTHO05D004529 4.8e-47 191.8 198 53.0
MD09G1116100 Malus domestica HOM05D000172 ORTHO05D004529 4.8e-47 191.8 199 53.8
Peaxi162Scf01333g00016 Petunia axillaris HOM05D000172 ORTHO05D004529 4.8e-47 191.8 183 58.5
Sopen07g024800 Solanum pennellii HOM05D000172 ORTHO05D004529 4.8e-47 191.8 200 54.5
Cc05_g02520 Coffea canephora HOM05D000172 ORTHO05D004529 6.3e-47 191.4 180 57.8
Gohir.D11G159300 Gossypium hirsutum HOM05D000172 ORTHO05D004529 6.3e-47 191.4 200 54.5
Gorai.007G169700 Gossypium raimondii HOM05D000172 ORTHO05D004529 6.3e-47 191.4 200 54.5
Oeu010999.1 Olea europaea HOM05D000172 ORTHO05D004529 8.2e-47 191.0 199 54.8
Sc12g0002030 Simmondsia chinensis HOM05D000172 ORTHO05D004529 8.2e-47 191.0 201 53.7
GSVIVG01030525001 Vitis vinifera HOM05D000172 ORTHO05D004529 8.2e-47 191.0 192 55.2
Zm00001eb100620 Zea mays HOM05D000172 ORTHO05D004529 8.2e-47 191.0 200 52.5
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 1.1e-46 190.7 199 54.8
PGR142G0986 Punica granatum HOM05D000172 ORTHO05D004529 1.1e-46 190.7 199 52.8
SalBow1G3887 Salvia bowleyana HOM05D000172 ORTHO05D004529 1.4e-46 190.3 201 56.7
SalBow1G7178 Salvia bowleyana HOM05D000172 ORTHO05D004529 1.4e-46 190.3 201 56.7
Nn1g03356 Nelumbo nucifera HOM05D000172 ORTHO05D004529 1.8e-46 189.9 199 55.3
PSO210G3915 Papaver somniferum HOM05D000172 ORTHO05D004529 1.8e-46 189.9 201 53.2
Dinv08710 Davidia involucrata HOM05D000172 ORTHO05D004529 2.4e-46 189.5 188 56.4
Nitab4.5_0000130g0060 Nicotiana tabacum HOM05D000172 ORTHO05D004529 2.4e-46 189.5 190 57.9
AUR62017578 Chenopodium quinoa HOM05D000172 ORTHO05D004529 3.1e-46 189.1 192 53.6
Lalb_Chr10g0105541 Lupinus albus HOM05D000172 ORTHO05D004529 3.1e-46 189.1 192 52.6
Actinidia09754 Actinidia chinensis HOM05D000172 ORTHO05D004529 4.1e-46 188.7 193 55.4
HanXRQChr14g0429281 Helianthus annuus HOM05D000172 ORTHO05D004529 5.3e-46 188.3 200 55.0
Lj1A784T46 Lonicera japonica HOM05D000172 ORTHO05D004529 5.3e-46 188.3 192 55.7
TWI36G0304 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 5.3e-46 188.3 200 53.5
TWI75G1599 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 6.9e-46 188.0 199 53.8
CDE04G1854 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 2.6e-45 186.0 198 55.1
Lsat_1_v5_gn_9_105181 Lactuca sativa HOM05D000172 ORTHO05D004529 2.6e-45 186.0 200 54.5
EL10Ac9g22817 Beta vulgaris HOM05D000172 ORTHO05D004529 3.4e-45 185.7 191 53.4
Migut.H01249 Erythranthe guttata HOM05D000172 ORTHO05D004529 4.5e-45 185.3 201 53.7
Gohir.A11G152400 Gossypium hirsutum HOM05D000172 ORTHO05D004529 5.9e-45 184.9 199 53.3
Hund24209 Selenicereus undatus HOM05D000172 ORTHO05D004529 7.6e-45 184.5 192 52.6
TWI18G0101 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 7.6e-45 184.5 197 53.3
AUR62015115 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.0e-44 184.1 200 51.5
PSO832G1111 Papaver somniferum HOM05D000172 ORTHO05D004529 1.0e-44 184.1 201 52.2
Ciclev10015327m.g Citrus clementina HOM05D000172 ORTHO05D004529 2.2e-44 183.0 191 52.4
THA.LOC104826128 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 2.2e-44 183.0 204 51.5
Gohir.D07G174500 Gossypium hirsutum HOM05D000172 ORTHO05D004529 6.5e-44 181.4 191 52.9
Gorai.001G195100 Gossypium raimondii HOM05D000172 ORTHO05D004529 1.1e-43 180.6 191 52.9
Gohir.A07G168200 Gossypium hirsutum HOM05D000172 ORTHO05D004529 1.9e-43 179.9 191 53.9
AT1G04980 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 2.5e-43 179.5 197 51.3
FAN05G4236 Fragaria x ananassa HOM05D000172 ORTHO05D004529 2.5e-43 179.5 189 52.9
Aa31LG1G19810 Aethionema arabicum HOM05D000172 ORTHO05D004529 3.2e-43 179.1 205 50.7
AL1G14710 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 5.5e-43 178.3 191 51.8
Sp1g03850 Schrenkiella parvula HOM05D000172 ORTHO05D004529 6.1e-42 174.9 192 50.0
THA.LOC104801013 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 6.1e-42 174.9 190 53.2
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 7.9e-42 174.5 200 50.0
BolC5t29097H Brassica oleracea HOM05D000172 ORTHO05D004529 1.8e-41 173.3 191 51.3
BraA10t42622Z Brassica rapa HOM05D000172 ORTHO05D004529 1.8e-41 173.3 191 51.3
Aa31LG5G4580 Aethionema arabicum HOM05D000172 ORTHO05D004529 2.3e-41 172.9 202 49.0
Thhalv10007682m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 3.9e-41 172.2 192 50.0
A10p03460 Brassica napus HOM05D000172 ORTHO05D004529 5.1e-41 171.8 191 50.8
DCAR_021129 Daucus carota HOM05D000172 ORTHO05D004529 5.1e-41 171.8 183 53.6
Lj8A130T58 Lonicera japonica HOM05D000172 ORTHO05D004529 5.1e-41 171.8 182 56.0
C05p03170 Brassica napus HOM05D000172 ORTHO05D004529 1.1e-40 170.6 191 50.8
SHI10092 Sapria himalayana HOM05D000172 ORTHO05D004529 1.5e-40 170.2 198 47.5
Carub.0001s0422 Capsella rubella HOM05D000172 ORTHO05D004529 2.5e-40 169.5 198 48.0
AL4G28440 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 4.3e-40 168.7 202 47.5
Sp4g15280 Schrenkiella parvula HOM05D000172 ORTHO05D004529 2.2e-39 166.4 204 47.5
CARHR126850 Cardamine hirsuta HOM05D000172 ORTHO05D004529 2.8e-39 166.0 205 47.3
AT2G32920 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 3.7e-39 165.6 202 47.0
CARHR004390 Cardamine hirsuta HOM05D000172 ORTHO05D004529 3.7e-39 165.6 191 49.7
DCAR_019739 Daucus carota HOM05D000172 ORTHO05D004529 4.8e-39 165.2 207 49.3
C03p21560 Brassica napus HOM05D000172 ORTHO05D004529 1.1e-38 164.1 204 47.1
BraA05t20211Z Brassica rapa HOM05D000172 ORTHO05D004529 1.1e-38 164.1 205 45.9
BcaC01g05872 Brassica carinata HOM05D000172 ORTHO05D004529 1.8e-38 163.3 204 47.1
A05p12720 Brassica napus HOM05D000172 ORTHO05D004529 1.8e-38 163.3 205 45.9
C04p16640 Brassica napus HOM05D000172 ORTHO05D004529 1.8e-38 163.3 205 45.9
BolC4t23214H Brassica oleracea HOM05D000172 ORTHO05D004529 1.8e-38 163.3 205 45.9
Carub.0004s1435 Capsella rubella HOM05D000172 ORTHO05D004529 1.8e-38 163.3 203 46.8
BcaB01g03946 Brassica carinata HOM05D000172 ORTHO05D004529 2.4e-38 162.9 203 48.3
Thhalv10016663m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 2.0e-37 159.8 203 46.8
Pp3c4_12030 Physcomitrium patens HOM05D000172 ORTHO05D004529 7.7e-37 157.9 201 45.8
SMO146G0260 Selaginella moellendorffii HOM05D000172 ORTHO05D004529 7.7e-37 157.9 191 49.7
Actinidia13730 Actinidia chinensis HOM05D000172 ORTHO05D004529 4.2e-35 152.1 171 49.7
AagrBONN_evm.TU.Sc2ySwM_117.284 Anthoceros agrestis HOM05D000172 ORTHO05D004529 1.2e-34 150.6 201 46.3
TPR.G25669 Trifolium pratense HOM05D000172 ORTHO05D004529 6.1e-34 148.3 180 48.3
Mapoly0041s0078 Marchantia polymorpha HOM05D000172 ORTHO05D004529 4.4e-32 142.1 194 44.3
unitig_578.g16013 Utricularia gibba HOM05D000172 ORTHO05D004529 3.1e-30 136.0 153 53.6
Oeu025371.1 Olea europaea HOM05D000172 ORTHO05D004529 6.5e-28 128.3 203 41.4
CAN.G1254.2 Capsicum annuum HOM05D000172 ORTHO05D004529 2.7e-26 122.9 180 43.9
CDE07G0353 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 3.6e-26 122.5 179 43.6
BolC4t27717H Brassica oleracea HOM05D000568 ORTHO05D000628 1.8e-22 110.2 84 59.5
CSS0041321 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 4.1e-22 109.0 133 50.4
BcaC02g07878 Brassica carinata HOM05D000172 ORTHO05D004529 1.5e-19 100.5 96 52.1
Hma1.2p1_0405F.1_g145540 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 2.0e-16 90.1 72 59.7
Lalb_Chr17g0347151 Lupinus albus HOM05D000172 ORTHO05D004529 3.7e-15 85.9 63 63.5
CBR_g42178 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-12 77.0 75 50.7
BcaB02g10505 Brassica carinata HOM05D000172 ORTHO05D004529 3.2e-11 72.8 64 60.9
Cre07.g328150 Chlamydomonas reinhardtii HOM05D000172 ORTHO05D004529 6.1e-10 68.6 208 26.0
Os09g0451500 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D004529 1.0e-09 67.8 114 38.6
Lalb_Chr17g0347161 Lupinus albus HOM05D000172 ORTHO05D004529 5.2e-09 65.5 40 72.5
TAR629G0025 Trochodendron aralioides HOM05D000172 ORTHO05D004529 6.8e-09 65.1 40 75.0
Sed0016451 Sechium edule HOM05D000172 ORTHO05D004529 2.0e-08 63.5 41 68.3
Haze_27390 Corylus avellana HOM05D000172 ORTHO05D004529 2.6e-08 63.2 75 38.7
FAN03G0606 Fragaria x ananassa HOM05D000172 ORTHO05D004529 3.4e-08 62.8 41 68.3
Pp3c12_19050 Physcomitrium patens HOM05D000172 ORTHO05D004529 1.7e-07 60.5 125 36.8


User provided reference genes

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