Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 7.4e-40 166.8 86 100.0
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 3.1e-38 161.4 86 96.5
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 7.5e-16 87.0 90 57.8
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 1.7e-15 85.9 90 58.9
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 1.7e-15 85.9 91 58.2
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 2.2e-15 85.5 84 56.0
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 2.2e-15 85.5 84 56.0
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 2.8e-15 85.1 90 57.8
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 2.8e-15 85.1 90 56.7
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 8.3e-15 83.6 89 55.1
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 1.1e-14 83.2 90 56.7
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 1.4e-14 82.8 90 56.7
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.8e-14 82.4 90 56.7
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 2.4e-14 82.0 90 55.6
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 3.1e-14 81.6 90 53.3
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 3.1e-14 81.6 90 53.3
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 3.1e-14 81.6 90 57.8
Os06g0686600 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D006216 4.1e-14 81.3 89 55.1
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 5.4e-14 80.9 92 52.2
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 5.4e-14 80.9 92 52.2
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 5.4e-14 80.9 90 53.3
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 9.1e-14 80.1 90 52.2
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 9.1e-14 80.1 90 52.2
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 9.1e-14 80.1 90 52.2
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 9.1e-14 80.1 88 56.8
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 2.0e-13 79.0 92 53.3
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 2.0e-13 79.0 90 51.1
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 2.0e-13 79.0 90 53.3
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 2.7e-13 78.6 90 52.2
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 3.5e-13 78.2 84 53.6
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 3.5e-13 78.2 84 53.6
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 5.9e-13 77.4 92 48.9
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 5.9e-13 77.4 90 50.0
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 7.7e-13 77.0 84 56.0
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 7.7e-13 77.0 88 53.4
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 7.7e-13 77.0 85 51.8
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 7.7e-13 77.0 85 51.8
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 1.0e-12 76.6 89 53.9
AUR62044756 Chenopodium quinoa HOM05D000786 ORTHO05D006216 1.3e-12 76.3 92 47.8
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 1.3e-12 76.3 90 48.9
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 1.7e-12 75.9 91 49.5
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.7e-12 75.9 91 49.5
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.7e-12 75.9 91 49.5
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.7e-12 75.9 91 49.5
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.7e-12 75.9 91 49.5
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 1.7e-12 75.9 90 48.9
Zm00001eb225670 Zea mays HOM05D000786 ORTHO05D006216 1.7e-12 75.9 88 51.1
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 2.3e-12 75.5 87 49.4
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 2.3e-12 75.5 89 52.8
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 2.3e-12 75.5 92 50.0
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 2.3e-12 75.5 85 51.8
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 2.3e-12 75.5 83 53.0
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 2.3e-12 75.5 90 47.8
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 2.3e-12 75.5 89 51.7
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 2.9e-12 75.1 85 52.9
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 2.9e-12 75.1 92 50.0
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 2.9e-12 75.1 92 53.3
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 2.9e-12 75.1 92 47.8
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 3.8e-12 74.7 84 51.2
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 3.8e-12 74.7 90 51.1
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 6.6e-12 73.9 83 54.2
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 6.6e-12 73.9 90 50.0
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 8.6e-12 73.6 90 51.1
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 1.1e-11 73.2 92 47.8
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 1.1e-11 73.2 88 50.0
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 1.5e-11 72.8 87 52.9
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.5e-11 72.8 93 51.6
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 1.9e-11 72.4 88 50.0
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 1.9e-11 72.4 92 50.0
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 2.5e-11 72.0 92 46.7
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 2.5e-11 72.0 90 46.7
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 2.5e-11 72.0 88 45.5
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 2.5e-11 72.0 89 50.6
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 2.5e-11 72.0 90 48.9
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 3.3e-11 71.6 88 44.3
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 3.3e-11 71.6 89 49.4
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 3.3e-11 71.6 83 54.2
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 4.2e-11 71.2 91 45.1
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 4.2e-11 71.2 83 51.8
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 5.5e-11 70.9 90 45.6
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 5.5e-11 70.9 90 46.7
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 7.2e-11 70.5 82 53.7
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 7.2e-11 70.5 86 51.2
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 7.2e-11 70.5 83 49.4
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 7.2e-11 70.5 90 45.6
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 7.2e-11 70.5 87 49.4
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 7.2e-11 70.5 85 50.6
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 7.2e-11 70.5 85 50.6
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 7.2e-11 70.5 88 45.5
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 9.5e-11 70.1 90 48.9
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 9.5e-11 70.1 86 52.3
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 9.5e-11 70.1 89 48.3
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 1.6e-10 69.3 82 52.4
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 1.6e-10 69.3 82 52.4
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 1.6e-10 69.3 82 52.4
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 1.6e-10 69.3 93 49.5
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 1.6e-10 69.3 92 45.7
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 1.6e-10 69.3 83 49.4
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 1.6e-10 69.3 91 47.3
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 1.6e-10 69.3 93 49.5
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 1.6e-10 69.3 83 49.4
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 1.6e-10 69.3 85 49.4
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 2.1e-10 68.9 90 47.8
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 2.1e-10 68.9 82 52.4
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 2.1e-10 68.9 82 50.0
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 2.8e-10 68.6 90 50.0
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 2.8e-10 68.6 83 49.4
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 2.8e-10 68.6 83 51.8
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 3.6e-10 68.2 82 52.4
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 3.6e-10 68.2 92 47.8
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 3.6e-10 68.2 93 46.2
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 3.6e-10 68.2 61 55.7
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 4.7e-10 67.8 89 48.3
PSO541G3255 Papaver somniferum HOM05D000786 ORTHO05D006216 4.7e-10 67.8 93 46.2
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 4.7e-10 67.8 85 47.1
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 6.1e-10 67.4 82 51.2
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 6.1e-10 67.4 93 48.4
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 6.1e-10 67.4 88 43.2
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 8.0e-10 67.0 82 48.8
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 8.0e-10 67.0 94 46.8
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.0e-09 66.6 94 45.7
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 1.0e-09 66.6 94 46.8
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 1.0e-09 66.6 88 43.2
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 1.4e-09 66.2 87 43.7
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 1.4e-09 66.2 82 50.0
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 2.3e-09 65.5 94 45.7
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 2.3e-09 65.5 94 45.7
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 3.0e-09 65.1 92 45.7
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.0e-09 64.7 94 44.7
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 4.0e-09 64.7 94 45.7
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 6.8e-09 63.9 89 43.8
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 8.9e-09 63.5 83 44.6
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 1.5e-08 62.8 87 43.7
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 2.6e-08 62.0 91 44.0
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 9.8e-08 60.1 86 47.7
Glyma.04G217900 Glycine max HOM05D000786 ORTHO05D006216 3.7e-07 58.2 88 48.9
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 4.9e-07 57.8 81 44.4
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 6.3e-07 57.4 86 46.5
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 1.1e-06 56.6 94 44.7
Os03g0302500 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 1.8e-06 55.8 41 61.0
Peaxi162Scf00025g00337 Petunia axillaris HOM05D000786 ORTHO05D006216 1.8e-06 55.8 83 47.0
Psat5g036120 Pisum sativum HOM05D000786 ORTHO05D000779 1.8e-06 55.8 57 47.4
HanXRQChr03g0071471 Helianthus annuus HOM05D000786 ORTHO05D000779 2.4e-06 55.5 66 47.0
Zm00001eb273520 Zea mays HOM05D000786 ORTHO05D006216 4.1e-06 54.7 84 44.0
Phvul.009G079000 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 5.4e-06 54.3 57 49.1
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 7.0e-06 53.9 52 51.9
Rhsim04G0232400 Rhododendron simsii HOM05D000786 ORTHO05D000779 7.0e-06 53.9 60 45.0
VMungo1309G1255 Vigna mungo HOM05D000786 ORTHO05D000779 7.0e-06 53.9 57 49.1
CAN.G950.2 Capsicum annuum HOM05D000786 ORTHO05D000779 9.2e-06 53.5 60 46.7
Lj1g0021494 Lotus japonicus HOM05D000786 ORTHO05D000779 9.2e-06 53.5 82 41.5
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 9.2e-06 53.5 65 44.6
Medtr3g104640 Medicago truncatula HOM05D000786 ORTHO05D000779 9.2e-06 53.5 57 49.1
TAR362G0003 Trochodendron aralioides HOM05D000786 ORTHO05D000779 9.2e-06 53.5 59 47.5


User provided reference genes

Program Settings