Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 0.0e+00 1299.6 675 100.0
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 6.7e-128 462.2 650 46.5
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 2.6e-127 460.3 641 47.7
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.4e-125 453.8 552 51.3
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 2.6e-124 450.3 699 44.5
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 2.6e-124 450.3 699 44.5
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 7.7e-124 448.7 645 46.7
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 9.4e-122 441.8 655 45.5
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 3.6e-121 439.9 717 44.6
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.8e-118 430.3 621 46.7
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 6.3e-118 429.1 636 46.7
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.8e-117 427.6 614 46.1
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.8e-117 427.6 653 46.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 1.2e-116 424.9 621 46.5
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.2e-116 424.9 657 45.8
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.3e-115 421.4 607 46.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.9e-115 420.2 645 44.0
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.2e-113 414.8 630 44.8
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 2.7e-113 413.7 656 44.4
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.4e-112 411.4 688 42.3
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 5.2e-112 409.5 667 43.0
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 5.2e-112 409.5 740 40.7
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.5e-111 407.9 663 42.5
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 2.0e-111 407.5 580 44.8
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 2.0e-111 407.5 655 42.3
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.6e-111 407.1 675 42.2
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.3e-111 406.8 681 43.0
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 4.4e-111 406.4 622 44.4
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.3e-110 404.8 667 43.2
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 4.8e-110 402.9 548 47.1
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.1e-109 401.7 664 42.2
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.1e-109 401.7 608 44.6
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.4e-109 401.4 526 48.3
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.8e-109 401.0 632 44.5
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 5.3e-109 399.4 626 44.1
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.0e-109 399.1 610 45.1
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 7.0e-109 399.1 636 44.2
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 9.1e-109 398.7 673 43.2
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.2e-108 398.3 555 47.0
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.2e-108 398.3 610 45.1
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.2e-108 398.3 630 43.8
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 1.2e-108 398.3 677 42.1
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 2.0e-108 397.5 605 43.3
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 3.5e-108 396.7 586 45.7
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.7e-107 394.4 658 42.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.8e-107 393.3 651 41.9
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.8e-107 393.3 665 42.1
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 5.0e-107 392.9 602 42.7
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 6.5e-107 392.5 652 43.1
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.1e-106 391.7 657 43.5
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.2e-106 390.2 609 45.0
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 4.2e-106 389.8 681 41.7
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 5.5e-106 389.4 629 44.4
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.5e-106 389.4 652 42.6
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 3.6e-105 386.7 653 43.0
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 8.0e-105 385.6 679 42.4
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.8e-104 384.4 667 40.9
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.8e-104 384.4 666 41.6
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 2.3e-104 384.0 539 45.5
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 2.3e-104 384.0 671 42.9
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 3.0e-104 383.6 541 45.8
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.4e-103 380.2 630 42.7
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 2.2e-102 377.5 603 43.0
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.8e-101 374.4 599 42.4
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 2.4e-101 374.0 626 43.0
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 3.1e-101 373.6 663 40.9
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 3.1e-101 373.6 609 43.8
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 5.4e-101 372.9 603 42.6
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.0e-100 370.9 588 44.4
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 4.5e-100 369.8 591 43.3
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 5.9e-100 369.4 627 42.6
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 1.9e-98 364.4 716 39.4
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 5.5e-98 362.8 672 40.3
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 7.2e-98 362.5 547 44.1
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 6.1e-97 359.4 711 39.2
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.5e-95 354.8 620 42.1
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.5e-95 354.8 631 42.0
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.4e-95 353.6 605 41.5
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 4.4e-95 353.2 651 41.3
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 5.7e-95 352.8 738 37.8
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 5.7e-95 352.8 689 39.8
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.3e-94 351.7 685 39.9
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.3e-94 351.7 630 41.1
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-94 351.7 628 41.2
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.8e-94 350.5 578 43.1
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.9e-90 337.8 505 46.1
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 5.6e-90 336.3 641 40.1
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.2e-89 335.1 516 45.9
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.4e-87 327.0 536 43.5
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.7e-87 326.2 565 41.6
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 7.5e-87 325.9 592 40.0
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 9.8e-87 325.5 610 39.2
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.7e-86 324.7 607 39.9
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 3.2e-85 320.5 620 39.5
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 7.8e-84 315.8 537 41.0
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 2.3e-83 314.3 616 38.1
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 8.6e-83 312.4 599 38.4
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 8.0e-81 305.8 598 39.3
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 9.8e-79 298.9 587 39.5
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 1.7e-78 298.1 488 42.2
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.2e-78 297.7 585 38.5
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 3.7e-78 297.0 591 38.6
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 3.7e-78 297.0 591 38.6
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 4.6e-76 290.0 577 38.3
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 3.6e-73 280.4 631 36.3
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 8.1e-73 279.3 688 34.2
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.4e-72 278.5 618 37.9
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 5.2e-72 276.6 287 54.7
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.0e-67 260.8 263 53.2
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 1.5e-66 258.5 193 66.3
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 4.7e-65 253.4 456 41.0
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 4.0e-64 250.4 446 41.0
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.2e-57 228.8 472 37.7
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 2.8e-57 227.6 197 57.9
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.9e-53 214.9 448 37.3
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 1.6e-52 211.8 445 39.6
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.6e-49 201.8 259 43.2
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.8e-48 198.4 194 51.0
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 9.9e-47 192.6 534 33.1
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 7.1e-45 186.4 211 45.0
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 4.6e-36 157.1 401 34.9
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 3.0e-35 154.5 512 30.7
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.0e-30 139.4 448 31.7
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.9e-29 135.2 145 54.5
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 7.9e-28 129.8 175 46.9
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.9e-26 125.2 145 53.1
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 2.4e-24 118.2 225 39.6
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 5.9e-23 113.6 101 56.4
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 2.2e-22 111.7 234 35.0
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 8.5e-22 109.8 144 45.1
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 3.6e-20 104.4 155 43.2
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.4e-19 102.4 74 64.9
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 6.7e-19 100.1 131 48.9
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 5.7e-18 97.1 73 64.4
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 9.7e-18 96.3 177 39.5
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.8e-17 94.0 83 62.7
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 8.2e-17 93.2 455 28.4
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.4e-16 91.7 128 44.5
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.1e-12 78.6 89 43.8
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 9.7e-10 69.7 131 35.1
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 9.7e-10 69.7 65 55.4
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 8.2e-09 66.6 81 45.7
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.8e-08 65.5 44 68.2
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.2e-07 62.8 130 40.0
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.5e-07 62.4 44 70.5
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.0e-07 62.0 141 39.0
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 1.7e-06 58.9 53 49.1
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 2.2e-06 58.5 40 65.0


User provided reference genes

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