Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.2e-192 675.6 380 100.0
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.1e-130 470.7 389 76.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 2.3e-93 346.7 383 56.4
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.6e-89 334.0 327 59.0
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 3.8e-88 329.3 400 53.0
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.1e-87 327.8 400 52.8
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.5e-87 326.6 400 52.5
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 2.6e-84 316.6 350 55.1
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 2.6e-84 316.6 350 55.1
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.6e-84 316.6 350 55.1
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 2.6e-84 316.6 359 54.3
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 4.4e-84 315.8 350 55.7
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.7e-83 313.9 363 53.7
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.8e-83 313.2 350 54.3
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.4e-82 310.8 400 51.0
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 2.4e-82 310.1 353 54.7
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 5.3e-82 308.9 350 55.1
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.7e-81 306.6 353 54.1
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 7.7e-81 305.1 355 53.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.0e-80 304.7 350 53.7
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.0e-80 304.7 400 48.2
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-80 303.9 400 48.5
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.2e-80 303.5 351 53.6
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 2.2e-80 303.5 360 53.9
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 2.9e-80 303.1 392 50.8
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.9e-80 303.1 401 48.1
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.0e-80 302.4 373 51.2
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 8.5e-80 301.6 413 47.2
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 8.5e-80 301.6 365 50.4
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.1e-79 301.2 399 49.6
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-79 301.2 400 48.5
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.5e-79 300.1 400 47.8
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.2e-79 299.7 348 52.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 7.2e-79 298.5 366 51.6
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.6e-78 297.4 399 47.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 2.7e-78 296.6 349 51.6
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.7e-78 296.6 397 49.9
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 4.7e-78 295.8 354 51.1
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 6.1e-78 295.4 411 47.7
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 8.0e-78 295.0 339 54.6
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.0e-77 294.7 400 47.5
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.8e-77 293.9 372 49.5
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.3e-77 293.5 351 52.1
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.3e-77 293.5 397 49.6
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 4.0e-77 292.7 352 51.7
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 5.2e-77 292.4 354 50.8
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 5.2e-77 292.4 348 52.6
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 8.8e-77 291.6 397 46.3
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.5e-76 290.8 363 50.4
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 5.7e-76 288.9 397 46.1
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 7.5e-76 288.5 399 47.9
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.3e-75 287.7 366 49.2
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.7e-75 287.3 348 51.4
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.8e-75 286.6 374 48.4
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.8e-75 286.6 382 48.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 3.7e-75 286.2 401 45.9
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 3.7e-75 286.2 355 50.4
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 3.7e-75 286.2 350 50.6
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.4e-74 284.3 372 48.1
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.4e-74 283.5 350 50.3
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 4.1e-74 282.7 359 52.4
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 7.0e-74 282.0 368 48.6
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 9.1e-74 281.6 359 51.3
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.2e-73 281.2 358 50.3
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 1.2e-73 281.2 368 49.5
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.7e-73 280.0 398 47.5
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.7e-73 280.0 398 47.5
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 2.7e-73 280.0 349 50.4
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.7e-73 280.0 342 52.0
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.0e-72 278.1 351 50.4
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.7e-72 277.3 387 47.0
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.7e-72 277.3 383 46.2
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 2.3e-72 276.9 358 50.3
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.9e-72 276.6 368 48.4
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.6e-72 275.0 328 51.8
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-71 274.6 398 47.0
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.3e-71 273.1 405 46.4
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.2e-70 271.2 400 46.2
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 2.1e-70 270.4 413 46.5
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 3.6e-70 269.6 398 46.2
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.0e-69 268.1 367 48.0
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.8e-69 267.3 376 45.7
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 3.0e-69 266.5 398 46.2
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.0e-68 263.8 396 45.5
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.0e-68 263.8 396 45.5
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 9.8e-68 261.5 411 43.6
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 2.8e-67 260.0 396 45.5
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 3.7e-67 259.6 411 43.6
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 3.7e-67 259.6 398 45.2
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.1e-66 256.1 362 47.2
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 7.0e-66 255.4 401 45.9
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.0e-64 251.5 367 45.8
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 6.6e-64 248.8 401 43.4
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 7.3e-63 245.4 394 44.4
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.2e-62 244.6 354 45.5
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 3.6e-62 243.0 404 43.3
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 9.8e-60 235.0 326 48.8
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.3e-59 234.6 376 44.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 4.1e-58 229.6 384 41.7
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 9.2e-58 228.4 260 55.0
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.0e-56 223.4 394 42.4
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 3.0e-56 223.4 364 43.1
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 5.6e-55 219.2 400 42.0
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 3.1e-53 213.4 379 43.3
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.5e-49 199.9 333 40.8
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.0e-49 199.1 401 37.2
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 4.0e-45 186.4 269 46.5
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 5.2e-45 186.0 282 47.2
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.6e-44 183.7 226 51.8
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.9e-43 180.3 367 38.1
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 2.4e-42 177.2 277 44.4
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 4.1e-42 176.4 233 47.6
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 9.2e-42 175.3 280 45.4
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.0e-40 171.8 358 36.6
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.3e-39 165.6 193 51.8
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 9.5e-39 165.2 241 45.6
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.7e-32 144.4 205 46.3
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.5e-28 131.3 228 42.5
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 6.4e-27 125.9 364 33.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-26 125.2 101 65.3
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.9e-26 124.4 94 68.1
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 2.4e-26 124.0 274 38.3
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 4.6e-25 119.8 96 68.8
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.3e-24 118.2 283 36.0
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.1e-24 116.3 128 51.6
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.1e-21 108.6 337 30.3
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.4e-21 108.2 127 50.4
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 6.9e-21 105.9 139 47.5
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 2.6e-20 104.0 300 31.0
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.2e-19 100.9 118 50.0
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.4e-19 99.4 78 65.4
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 9.0e-13 79.0 169 38.5
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 9.0e-13 79.0 90 51.1
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 9.0e-13 79.0 95 51.6
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 3.8e-11 73.6 158 40.5
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-10 71.6 124 39.5
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.0e-08 65.5 150 38.7
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 2.8e-06 57.4 36 75.0
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 4.8e-06 56.6 90 44.4


User provided reference genes

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