Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.3e-236 822.8 432 100.0
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 7.8e-146 521.2 439 65.8
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 9.5e-136 487.6 435 60.0
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 8.1e-135 484.6 442 61.1
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.8e-134 483.4 442 62.7
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.4e-131 473.0 419 60.6
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.2e-130 470.7 444 60.4
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.0e-130 468.4 437 61.1
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.3e-129 467.2 443 60.0
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.7e-129 466.8 459 59.3
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 3.0e-129 466.1 436 60.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.9e-129 465.7 436 60.1
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 5.1e-129 465.3 433 58.2
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.3e-127 460.7 448 57.8
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-127 460.7 441 60.3
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.1e-127 459.9 444 59.5
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.4e-126 456.4 446 57.2
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.2e-125 454.1 446 57.6
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.6e-125 453.0 436 59.9
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 3.4e-125 452.6 438 58.7
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 4.4e-125 452.2 437 59.3
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 9.9e-125 451.1 437 57.2
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.3e-124 450.7 443 56.4
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.7e-124 450.3 436 57.8
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.9e-124 449.5 438 58.9
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 1.1e-123 447.6 443 56.4
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.4e-123 447.2 421 58.0
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 1.9e-123 446.8 440 57.5
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.4e-123 446.4 431 58.2
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 3.2e-123 446.0 443 57.3
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-122 444.1 438 58.0
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 6.0e-122 441.8 436 57.8
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.0e-121 441.0 435 59.1
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.3e-121 440.7 444 58.1
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.3e-121 439.9 435 57.5
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.3e-121 439.9 448 56.0
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 2.3e-121 439.9 443 56.2
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 6.6e-121 438.3 431 57.5
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.6e-121 438.3 431 57.8
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.5e-120 437.2 443 55.8
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.5e-120 437.2 438 57.3
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.5e-120 436.4 442 57.2
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.6e-120 435.3 442 57.0
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 5.6e-120 435.3 441 58.7
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.3e-119 434.1 438 54.8
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.1e-119 433.3 449 57.5
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 2.8e-119 433.0 439 55.1
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 3.6e-119 432.6 437 57.0
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 6.2e-119 431.8 439 55.8
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 6.2e-119 431.8 437 56.8
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.1e-118 431.0 437 56.8
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.8e-118 430.3 442 56.3
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 5.3e-118 428.7 440 55.0
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 6.9e-118 428.3 438 55.3
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.9e-118 428.3 443 57.1
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 6.9e-118 428.3 424 57.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 9.0e-118 427.9 443 56.9
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 2.6e-117 426.4 442 55.7
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 5.8e-117 425.2 438 55.3
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 5.8e-117 425.2 444 54.7
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 7.6e-117 424.9 428 57.0
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 9.9e-117 424.5 442 56.6
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.3e-116 424.1 443 55.3
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 2.2e-116 423.3 436 54.4
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 4.9e-116 422.2 443 56.0
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 6.4e-116 421.8 438 54.6
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 8.4e-116 421.4 439 55.1
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 8.4e-116 421.4 436 54.1
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.1e-115 421.0 439 54.9
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.4e-115 420.6 436 53.9
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.9e-115 420.2 439 54.4
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.4e-115 419.9 439 54.7
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.4e-115 419.9 439 53.8
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.2e-115 419.5 445 54.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 3.2e-115 419.5 438 55.3
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.2e-115 419.5 435 56.8
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 3.2e-115 419.5 439 56.0
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 4.2e-115 419.1 439 54.4
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 7.1e-115 418.3 436 54.6
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 7.1e-115 418.3 443 56.4
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 9.3e-115 417.9 438 54.3
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.2e-114 417.5 439 54.9
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 2.1e-114 416.8 439 54.7
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 3.5e-114 416.0 435 54.9
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 3.5e-114 416.0 433 55.0
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 7.9e-114 414.8 412 54.1
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.0e-113 414.5 440 55.0
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.3e-113 414.1 438 53.7
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.3e-113 414.1 439 52.4
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.8e-113 413.7 418 56.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 3.9e-113 412.5 431 55.5
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.1e-113 412.1 463 54.0
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 5.1e-113 412.1 438 54.8
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.7e-113 411.8 435 54.7
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.5e-112 410.6 422 54.5
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.5e-112 409.8 438 53.2
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 3.3e-112 409.5 442 52.9
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 2.8e-111 406.4 436 53.0
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.7e-111 406.0 443 52.6
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 6.2e-111 405.2 428 52.6
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.8e-110 403.7 429 54.8
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.3e-110 402.1 512 48.0
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.7e-108 397.1 426 52.8
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 3.8e-108 396.0 431 56.4
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 8.4e-108 394.8 418 54.3
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.9e-107 393.7 429 54.3
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.5e-107 393.3 380 58.9
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.5e-107 393.3 373 58.2
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.2e-107 392.5 439 52.8
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.6e-106 390.6 437 52.6
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 7.9e-106 388.3 479 50.3
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.3e-105 387.5 437 51.7
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 3.3e-104 382.9 435 50.3
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 4.8e-103 379.0 446 50.2
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 4.8e-103 379.0 445 51.2
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 5.3e-102 375.6 443 50.8
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.2e-99 365.9 437 51.3
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.2e-95 351.7 437 52.4
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.0e-93 347.1 391 53.2
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 4.5e-85 319.3 423 45.6
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.7e-84 317.4 421 47.5
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.7e-82 309.3 194 91.8
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 2.3e-81 307.0 287 60.3
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 3.9e-81 306.2 515 42.3
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 8.8e-81 305.1 282 58.2
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.8e-79 300.1 381 50.1
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 4.1e-78 296.2 354 48.6
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 3.5e-77 293.1 289 54.7
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 4.5e-77 292.7 419 43.0
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.5e-75 287.7 307 54.7
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.2e-75 286.6 413 41.9
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.0e-57 228.4 247 53.4
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.8e-55 220.3 197 62.4
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 8.3e-55 218.8 186 64.0
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.0e-52 211.8 191 59.2
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.7e-52 211.1 168 66.7
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 4.0e-49 199.9 170 60.0
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 5.4e-46 189.5 325 40.9
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.9e-44 183.7 421 34.9
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.3e-43 179.1 152 63.2
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 9.2e-38 162.2 145 61.4
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.3e-31 141.7 144 50.0
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 8.3e-31 139.0 235 39.6
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 4.7e-26 123.2 117 56.4
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.5e-24 118.2 88 69.3
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 8.4e-23 112.5 120 57.5
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 6.0e-21 106.3 119 47.9
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-18 98.6 88 55.7
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.0e-16 91.3 116 48.3
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.9e-15 87.4 80 57.5
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 2.6e-08 64.3 54 55.6
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.2e-07 61.2 68 55.9
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.2e-06 57.4 437 22.2


User provided reference genes

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