Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.1e-105 386.7 212 100.0
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.3e-82 310.1 194 91.8
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 9.6e-65 250.8 188 67.6
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.8e-64 249.2 188 68.1
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.4e-63 246.9 192 67.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.5e-62 243.4 188 67.0
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.5e-62 243.4 188 67.0
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.7e-61 240.0 192 66.7
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 5.0e-61 238.4 192 67.2
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 6.5e-61 238.0 192 67.2
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 8.4e-61 237.7 197 66.0
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.9e-60 236.5 192 63.0
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.9e-60 236.5 188 67.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 4.2e-60 235.3 188 68.1
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 4.2e-60 235.3 188 68.1
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 9.3e-60 234.2 192 63.5
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.6e-59 233.4 190 63.2
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 2.1e-59 233.0 188 65.4
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 3.5e-59 232.3 188 64.9
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.0e-58 230.7 192 64.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.3e-58 230.3 188 64.9
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.3e-58 230.3 201 64.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.8e-58 229.9 188 65.4
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 3.9e-58 228.8 188 63.3
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 5.1e-58 228.4 191 63.4
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 5.1e-58 228.4 188 63.3
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 6.7e-58 228.0 192 64.1
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.7e-58 228.0 192 61.5
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.1e-57 227.3 188 66.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 1.5e-57 226.9 191 62.3
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.9e-57 226.5 196 62.2
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.5e-57 226.1 188 63.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.3e-57 225.7 205 60.5
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.3e-57 225.7 199 62.3
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 5.7e-57 224.9 186 65.6
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 5.7e-57 224.9 186 64.5
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 7.4e-57 224.6 190 61.1
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 7.4e-57 224.6 190 61.6
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 7.4e-57 224.6 190 62.1
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 7.4e-57 224.6 190 61.6
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 7.4e-57 224.6 191 62.3
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 7.4e-57 224.6 191 61.8
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.3e-56 223.8 192 63.0
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.3e-56 223.8 202 61.4
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 2.2e-56 223.0 190 61.6
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.8e-56 222.6 190 62.6
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 2.8e-56 222.6 190 62.6
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 3.7e-56 222.2 186 64.0
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 3.7e-56 222.2 186 64.0
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.8e-56 221.9 190 60.5
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 6.3e-56 221.5 192 59.4
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 8.2e-56 221.1 192 59.9
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 8.2e-56 221.1 190 60.5
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.4e-55 220.3 183 65.0
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.4e-55 220.3 192 58.9
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 2.4e-55 219.5 187 64.7
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 2.4e-55 219.5 192 58.9
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 3.1e-55 219.2 191 64.4
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 4.1e-55 218.8 191 59.7
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 6.9e-55 218.0 190 63.7
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 9.0e-55 217.6 192 63.0
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 9.0e-55 217.6 186 63.4
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.5e-54 216.9 188 63.3
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 2.0e-54 216.5 186 63.4
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.0e-54 216.5 186 63.4
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.6e-54 216.1 190 62.1
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 3.4e-54 215.7 186 63.4
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 3.4e-54 215.7 192 62.0
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 4.5e-54 215.3 188 61.7
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 4.5e-54 215.3 183 63.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 4.5e-54 215.3 190 58.9
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 4.5e-54 215.3 183 61.2
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 5.9e-54 214.9 187 60.4
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.0e-53 214.2 190 59.5
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.0e-53 214.2 186 62.9
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.9e-53 212.6 192 61.5
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 6.5e-53 211.5 193 58.5
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.2e-52 209.1 222 54.1
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 3.2e-52 209.1 193 59.1
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 4.2e-52 208.8 180 61.1
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 4.2e-52 208.8 188 62.8
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 4.2e-52 208.8 194 57.7
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 5.5e-52 208.4 187 62.0
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 5.5e-52 208.4 183 59.6
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.2e-52 208.0 190 56.3
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.2e-51 207.2 193 59.1
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.2e-51 207.2 183 60.7
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.2e-51 207.2 193 59.1
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.6e-51 206.8 196 60.2
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.1e-51 206.5 188 60.6
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.1e-51 206.5 183 61.2
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 2.1e-51 206.5 185 59.5
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 2.7e-51 206.1 193 59.6
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.7e-51 206.1 188 60.1
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.6e-51 205.7 183 60.7
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 3.6e-51 205.7 193 60.6
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 3.6e-51 205.7 196 60.7
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 4.6e-51 205.3 188 58.5
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 4.6e-51 205.3 230 53.9
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 6.1e-51 204.9 188 58.5
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 6.1e-51 204.9 208 55.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.1e-51 204.9 208 55.8
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 6.1e-51 204.9 188 59.0
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.0e-50 204.1 192 58.3
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.4e-50 203.8 183 59.0
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.3e-50 203.0 183 60.1
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 5.1e-50 201.8 193 57.0
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 6.7e-50 201.4 193 57.5
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 6.7e-50 201.4 193 57.5
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.5e-49 200.3 189 58.2
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 2.5e-49 199.5 193 56.5
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 2.8e-48 196.1 192 56.2
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.4e-47 193.7 192 55.7
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.4e-47 193.7 192 53.1
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.4e-47 193.0 183 58.5
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-46 189.5 192 53.1
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.6e-46 189.5 195 54.4
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.9e-46 188.3 186 55.9
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.9e-45 186.0 158 63.3
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.1e-44 184.1 171 57.9
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.4e-42 177.2 151 60.9
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.3e-42 176.4 188 54.3
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-40 170.6 257 42.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.2e-40 169.9 188 55.3
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 6.3e-40 168.3 133 66.9
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.0e-38 163.3 187 55.6
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.5e-38 162.2 145 61.4
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 4.2e-36 155.6 193 48.2
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 7.2e-36 154.8 135 57.0
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 6.3e-32 141.7 120 65.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 2.4e-31 139.8 187 39.6
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 4.1e-31 139.0 190 40.5
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 3.6e-27 125.9 213 39.9
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.3e-26 123.2 106 63.2
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.9e-21 106.3 119 47.9
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.9e-20 103.6 190 37.9
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.3e-18 96.7 184 36.4
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.8e-17 91.3 116 48.3
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 4.9e-16 89.0 54 81.5
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.4e-15 87.4 80 57.5
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.7e-13 80.5 52 71.2
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 5.6e-12 75.5 61 62.3


User provided reference genes

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