Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 4.7e-140 501.1 243 100.0
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 3.9e-78 295.4 246 60.6
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.1e-77 293.9 245 61.2
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.8e-75 286.6 255 58.0
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.5e-72 276.2 237 59.1
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 6.7e-70 268.1 248 57.7
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.1e-69 267.3 245 58.4
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.5e-69 266.9 249 56.6
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.9e-69 266.5 244 58.6
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 4.3e-69 265.4 240 58.3
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.3e-68 263.8 245 57.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.8e-67 260.0 234 57.7
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.8e-67 260.0 244 54.9
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.1e-67 259.2 236 58.5
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 4.1e-67 258.8 239 57.7
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 6.9e-67 258.1 243 56.4
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 6.9e-67 258.1 232 61.6
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 6.9e-67 258.1 244 55.3
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.2e-66 257.3 262 51.5
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.5e-66 256.9 232 61.2
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.6e-66 256.1 242 56.6
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.5e-66 255.4 243 54.7
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.3e-65 253.8 233 56.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.3e-65 253.8 248 54.0
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.3e-65 253.8 241 57.3
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-65 253.4 233 56.2
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.7e-65 253.4 245 53.9
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.7e-65 253.4 252 56.0
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.2e-65 253.1 245 55.5
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.9e-65 252.7 233 56.2
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.8e-65 252.3 245 55.1
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 3.8e-65 252.3 236 57.2
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 5.0e-65 251.9 254 55.5
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 8.5e-65 251.1 233 57.5
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 8.5e-65 251.1 239 54.0
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.4e-64 250.4 235 55.7
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.5e-64 249.6 237 57.8
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 2.5e-64 249.6 233 55.8
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.5e-64 249.6 252 54.8
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 5.5e-64 248.4 231 58.4
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 7.2e-64 248.1 229 57.2
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 7.2e-64 248.1 239 56.5
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 9.4e-64 247.7 253 54.2
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.2e-63 247.3 260 51.9
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.6e-63 246.9 232 54.7
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 2.7e-63 246.1 236 58.1
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 3.6e-63 245.7 242 55.0
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.6e-63 245.4 232 54.3
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.1e-63 245.0 275 49.5
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 7.9e-63 244.6 238 53.4
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 7.9e-63 244.6 232 54.7
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.8e-62 243.4 235 55.3
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.8e-62 243.4 244 52.5
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.3e-62 243.0 233 54.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.0e-62 242.7 244 54.1
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 5.1e-62 241.9 231 55.4
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 5.1e-62 241.9 242 52.5
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 6.7e-62 241.5 256 51.6
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 8.8e-62 241.1 247 55.5
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.1e-61 240.7 251 53.4
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.5e-61 240.4 232 54.3
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 2.0e-61 240.0 245 52.7
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.5e-61 239.6 233 53.6
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.5e-61 239.6 246 52.8
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 2.5e-61 239.6 247 53.4
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 3.3e-61 239.2 246 52.8
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 4.3e-61 238.8 241 53.1
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.3e-61 238.8 230 52.6
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 5.7e-61 238.4 238 53.8
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 7.4e-61 238.0 249 53.4
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.3e-60 237.3 244 52.0
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.3e-60 237.3 244 52.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.3e-60 237.3 233 55.8
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.2e-60 236.5 244 52.0
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.2e-60 236.5 231 55.0
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.8e-60 236.1 229 54.6
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.8e-60 236.1 229 55.9
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.8e-60 236.1 246 53.3
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 4.8e-60 235.3 244 52.5
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 6.3e-60 235.0 229 54.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 8.2e-60 234.6 235 54.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.1e-59 234.2 229 55.5
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.1e-59 234.2 230 55.2
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.4e-59 233.8 246 52.0
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.8e-59 233.4 234 53.4
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.8e-59 233.4 232 54.3
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.4e-59 233.0 232 52.2
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.4e-59 233.0 261 50.6
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 3.1e-59 232.6 249 51.8
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.1e-59 232.3 229 54.6
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 6.9e-59 231.5 230 53.0
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 6.9e-59 231.5 230 53.0
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 6.9e-59 231.5 239 52.3
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 9.1e-59 231.1 229 55.9
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 9.1e-59 231.1 245 51.4
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.5e-58 230.3 231 54.1
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 4.5e-58 228.8 235 52.8
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 7.7e-58 228.0 230 53.0
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.3e-57 227.3 229 55.9
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.2e-57 226.5 230 53.5
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-57 226.1 228 51.8
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 5.0e-57 225.3 236 53.0
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-56 224.2 228 51.3
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.1e-56 224.2 242 51.2
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-56 224.2 237 51.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.1e-56 224.2 236 52.1
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.4e-56 223.8 280 46.4
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.2e-56 222.6 251 49.8
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 5.5e-56 221.9 228 50.4
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 7.2e-56 221.5 239 50.2
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-56 221.5 239 50.2
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-56 221.5 239 50.2
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 9.4e-56 221.1 218 56.4
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.2e-55 220.7 248 51.6
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.2e-55 220.7 229 52.8
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.2e-55 220.7 237 49.8
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.6e-55 220.3 235 52.3
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.1e-55 219.9 233 52.4
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 4.7e-55 218.8 234 52.1
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 6.1e-55 218.4 256 48.8
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.0e-54 217.6 239 49.4
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-54 217.2 239 49.4
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.8e-54 216.9 263 47.1
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 2.3e-54 216.5 183 59.6
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.9e-54 215.7 233 49.4
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.3e-53 212.6 226 50.0
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 5.7e-53 211.8 180 61.1
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.8e-52 209.5 182 58.8
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 3.7e-52 209.1 199 56.3
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 8.2e-52 208.0 285 44.6
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.0e-49 201.1 254 49.2
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.3e-49 200.7 146 68.5
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 3.2e-48 196.1 140 65.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 3.2e-48 196.1 128 72.7
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-48 194.9 260 43.5
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 7.2e-48 194.9 143 66.4
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.6e-47 192.6 244 46.7
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 7.4e-45 184.9 175 55.4
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 6.3e-44 181.8 124 69.4
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.8e-43 180.3 125 68.0
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-42 176.4 121 66.1
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.9e-40 170.2 122 67.2
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 4.2e-40 169.1 144 61.1
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 8.0e-39 164.9 128 61.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.3e-36 157.5 186 48.9
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 6.3e-36 155.2 161 49.1
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 8.0e-31 138.3 98 69.4
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.2e-29 134.4 101 67.3
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.5e-29 134.0 124 58.1
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.6e-23 112.8 247 34.0
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 4.0e-22 109.4 232 34.1
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.6e-21 106.7 70 77.1
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.7e-18 96.7 119 39.5
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 7.8e-18 95.1 113 39.8
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 5.0e-17 92.4 89 52.8
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 7.3e-16 88.6 147 35.4
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 7.3e-16 88.6 72 56.9
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 5.2e-14 82.4 118 33.9
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 3.4e-13 79.7 121 35.5
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 3.2e-11 73.2 72 51.4
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 6.6e-09 65.5 88 50.0
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.6e-07 60.8 74 44.6
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 4.7e-07 59.3 86 43.0
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 3.1e-06 56.6 62 43.5
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 3.1e-06 56.6 113 36.3


User provided reference genes

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