Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 0.0e+00 1132.5 571 100.0
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 3.8e-241 838.2 567 74.3
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 4.2e-240 834.7 567 73.4
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 6.1e-239 830.9 571 73.2
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 1.1e-237 826.6 567 72.7
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 2.6e-237 825.5 570 73.2
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 9.7e-237 823.5 570 71.4
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 2.8e-236 822.0 568 72.4
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 9.1e-235 817.0 562 73.0
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 9.1e-235 817.0 570 70.7
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 4.5e-234 814.7 569 72.6
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 7.7e-234 813.9 561 72.5
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.0e-233 813.5 561 72.4
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 8.5e-233 810.4 566 71.2
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 3.2e-232 808.5 562 71.5
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 5.5e-232 807.7 567 71.1
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 1.2e-231 806.6 570 70.4
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 2.1e-231 805.8 558 72.4
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 3.6e-231 805.1 562 71.5
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.0e-230 803.5 567 70.7
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.0e-230 803.5 567 70.7
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 3.9e-230 801.6 575 69.2
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 5.2e-230 801.2 561 70.6
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 8.8e-230 800.4 567 70.7
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.5e-229 799.7 570 70.5
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.5e-229 799.7 568 71.0
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.5e-229 799.7 567 70.0
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.0e-229 799.3 566 70.5
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 3.3e-229 798.5 562 71.0
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 1.3e-228 796.6 567 71.1
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 1.7e-228 796.2 562 70.8
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 2.2e-228 795.8 566 71.2
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 8.2e-228 793.9 567 69.7
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 5.3e-227 791.2 594 68.5
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.3e-227 791.2 566 70.1
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 5.3e-227 791.2 562 71.0
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.2e-226 790.0 564 70.4
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 2.0e-226 789.3 551 71.1
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.7e-225 786.2 573 69.6
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 2.9e-225 785.4 561 70.1
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 3.8e-225 785.0 571 69.4
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 1.1e-224 783.5 565 70.4
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 1.9e-224 782.7 568 68.0
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.9e-224 782.7 567 68.4
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 3.2e-224 781.9 563 68.9
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 3.2e-224 781.9 568 68.3
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 4.2e-224 781.6 568 68.8
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 7.2e-224 780.8 559 69.1
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 9.4e-224 780.4 560 69.1
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 9.4e-224 780.4 566 68.0
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 3.6e-223 778.5 565 68.8
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 6.1e-223 777.7 561 69.3
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 8.0e-223 777.3 575 69.0
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 5.2e-222 774.6 566 68.4
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.5e-221 773.1 595 66.2
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.4e-221 771.5 561 69.5
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 2.2e-220 769.2 569 67.5
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 6.3e-220 767.7 561 67.9
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.1e-219 766.9 559 69.4
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 1.1e-219 766.9 561 69.5
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 2.4e-219 765.8 559 69.8
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 4.1e-219 765.0 567 67.7
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 4.1e-219 765.0 564 68.3
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 4.1e-219 765.0 573 67.5
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 9.1e-219 763.8 559 69.4
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 9.1e-219 763.8 559 69.4
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.2e-218 763.5 561 67.7
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.2e-218 763.5 558 67.9
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 2.0e-218 762.7 561 67.7
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 3.5e-218 761.9 561 67.4
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 3.5e-218 761.9 560 69.8
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 7.7e-218 760.8 562 66.9
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 2.9e-217 758.8 557 69.7
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 4.7e-215 751.5 588 65.8
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 6.8e-214 747.7 569 67.5
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 1.5e-213 746.5 548 69.2
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 5.4e-211 738.0 559 66.5
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.0e-210 736.1 618 62.1
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.6e-207 725.3 576 65.8
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 4.7e-207 724.9 568 65.7
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.9e-192 676.4 643 56.9
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 2.5e-192 676.0 467 71.9
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 1.4e-190 670.2 555 62.7
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 4.7e-183 645.2 462 69.0
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 1.8e-182 643.3 465 69.2
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 7.1e-179 631.3 638 53.8
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 4.7e-175 618.6 628 53.5
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 4.7e-175 618.6 628 53.5
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 6.2e-167 591.7 401 73.1
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.3e-161 573.9 392 73.0
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 2.5e-160 569.7 408 70.1
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.1e-159 566.6 415 68.7
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 4.0e-158 562.4 401 70.6
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.9e-155 553.5 411 68.6
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 1.9e-155 553.5 438 65.3
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 7.1e-155 551.6 400 69.0
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 8.1e-151 538.1 536 54.1
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 4.0e-150 535.8 559 53.7
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 3.1e-142 509.6 402 66.4
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.7e-127 460.7 311 72.0
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 1.8e-126 457.2 307 72.0
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 4.5e-125 452.6 550 46.4
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 3.0e-121 439.9 659 40.5
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 3.5e-117 426.4 328 64.3
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 1.6e-98 364.4 237 76.4
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 7.3e-83 312.4 195 79.0
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.8e-74 283.9 554 35.7
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 4.1e-70 270.0 159 83.0
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.1e-61 241.1 145 77.9
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 3.5e-61 240.4 419 37.5
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 6.6e-60 236.1 144 75.0
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 3.9e-52 210.3 129 76.7
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 1.4e-49 201.8 126 73.8
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 3.9e-44 183.7 104 80.8
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 1.3e-39 168.7 148 60.1
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 2.2e-39 167.9 102 81.4
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 2.1e-26 124.8 165 43.0
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 9.0e-25 119.4 68 80.9
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.0e-16 91.7 54 77.8
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 2.8e-10 71.2 166 30.1
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 1.7e-07 62.0 148 29.7
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 3.2e-06 57.8 169 26.6
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 3.2e-06 57.8 169 26.6
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 4.2e-06 57.4 173 28.3
Cre16.g653258 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 5.5e-06 57.0 124 33.1


User provided reference genes

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