Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017637 Vanilla planifolia HOM05D000682 ORTHO05D000510 4.0e-93 344.7 172 100.0
HPP92_017622 Vanilla planifolia HOM05D000682 ORTHO05D000510 6.0e-33 144.8 138 64.5
Manes.16G017400 Manihot esculenta HOM05D000682 ORTHO05D000510 1.7e-11 73.6 155 33.5
Phvul.006G196700 Phaseolus vulgaris HOM05D000682 ORTHO05D000510 2.1e-09 66.6 86 44.2
arahy.Tifrunner.gnm1.ann1.MPW62I Arachis hypogaea HOM05D000682 ORTHO05D000510 2.7e-09 66.2 88 46.6
Glyma.13G251400 Glycine max HOM05D000682 ORTHO05D000510 4.7e-09 65.5 86 43.0
arahy.Tifrunner.gnm1.ann1.VI2FPQ Arachis hypogaea HOM05D000682 ORTHO05D000510 6.1e-09 65.1 88 46.6
Eucgr.D00851 Eucalyptus grandis HOM05D000682 ORTHO05D000510 6.1e-09 65.1 91 47.3
Solyc03g031530.4 Solanum lycopersicum HOM05D000682 ORTHO05D000510 6.1e-09 65.1 91 41.8
Rhsim13G0162100 Rhododendron simsii HOM05D000682 ORTHO05D000510 8.0e-09 64.7 89 46.1
TAR624G1371 Trochodendron aralioides HOM05D000682 ORTHO05D000510 1.0e-08 64.3 88 45.5
CiPaw.10G066800 Carya illinoinensis HOM05D000682 ORTHO05D000510 1.4e-08 63.9 156 33.3
Lalb_Chr18g0060141 Lupinus albus HOM05D000682 ORTHO05D000510 1.4e-08 63.9 86 41.9
Os01g0786800 Oryza sativa ssp. japonica HOM05D000682 ORTHO05D000510 1.4e-08 63.9 155 34.8
VMungo0540G2139 Vigna mungo HOM05D000682 ORTHO05D000510 1.4e-08 63.9 86 41.9
Glyma.07G186600 Glycine max HOM05D000682 ORTHO05D000510 1.8e-08 63.5 88 45.5
Sc05g0008450 Simmondsia chinensis HOM05D000682 ORTHO05D000510 1.8e-08 63.5 90 43.3
Nitab4.5_0000900g0110 Nicotiana tabacum HOM05D000682 ORTHO05D000510 3.0e-08 62.8 96 41.7
Phvul.002G218000 Phaseolus vulgaris HOM05D000682 ORTHO05D000510 3.0e-08 62.8 88 45.5
Prupe.4G028900 Prunus persica HOM05D000682 ORTHO05D000510 3.0e-08 62.8 149 32.2
QL05p077124 Quercus lobata HOM05D000682 ORTHO05D000510 3.0e-08 62.8 91 41.8
CANSAT56G0871 Cannabis sativa HOM05D000682 ORTHO05D000510 3.9e-08 62.4 88 45.5
MELO3C002500.2 Cucumis melo HOM05D000682 ORTHO05D000510 3.9e-08 62.4 85 42.4
Lj4g0012888 Lotus japonicus HOM05D000682 ORTHO05D000510 3.9e-08 62.4 88 44.3
Lalb_Chr16g0383231 Lupinus albus HOM05D000682 ORTHO05D000510 3.9e-08 62.4 88 43.2
VMungo0251G2050 Vigna mungo HOM05D000682 ORTHO05D000510 3.9e-08 62.4 88 45.5
Atru.chr10.2108 Acer truncatum HOM05D000682 ORTHO05D000510 5.2e-08 62.0 91 41.8
Atru.chr10.2110 Acer truncatum HOM05D000682 ORTHO05D000510 5.2e-08 62.0 91 41.8
Cfa016413 Carpinus fangiana HOM05D000682 ORTHO05D000510 5.2e-08 62.0 157 33.1
Lalb_Chr05g0218001 Lupinus albus HOM05D000682 ORTHO05D000510 5.2e-08 62.0 88 42.0
Nn1g06965 Nelumbo nucifera HOM05D000682 ORTHO05D000510 5.2e-08 62.0 88 45.5
Aa31LG6G3260 Aethionema arabicum HOM05D000682 ORTHO05D000510 6.7e-08 61.6 85 44.7
CiPaw.09G080800 Carya illinoinensis HOM05D000682 ORTHO05D000510 6.7e-08 61.6 149 32.2
Carub.0002s0333 Capsella rubella HOM05D000682 ORTHO05D000510 8.8e-08 61.2 89 46.1
CAN.G569.60 Capsicum annuum HOM05D000682 ORTHO05D000510 8.8e-08 61.2 91 41.8
Ciclev10015151m.g Citrus clementina HOM05D000682 ORTHO05D000510 8.8e-08 61.2 85 40.0
Duzib192G0116 Durio zibethinus HOM05D000682 ORTHO05D000510 8.8e-08 61.2 88 43.2
Thhalv10023449m.g Eutrema salsugineum HOM05D000682 ORTHO05D000510 8.8e-08 61.2 90 44.4
Aa31LG2G9090 Aethionema arabicum HOM05D000682 ORTHO05D000510 1.1e-07 60.8 90 44.4
AL2G14380 Arabidopsis lyrata HOM05D000682 ORTHO05D000510 1.1e-07 60.8 89 44.9
AT1G61740 Arabidopsis thaliana HOM05D000682 ORTHO05D000510 1.1e-07 60.8 89 44.9
Cc02_g11740 Coffea canephora HOM05D000682 ORTHO05D000510 1.1e-07 60.8 94 39.4
Thecc.06G208900 Theobroma cacao HOM05D000682 ORTHO05D000510 1.1e-07 60.8 142 33.1
CARHR050600 Cardamine hirsuta HOM05D000682 ORTHO05D000510 1.5e-07 60.5 89 44.9
Haze_06692 Corylus avellana HOM05D000682 ORTHO05D000510 1.5e-07 60.5 89 43.8
Oeu051230.1 Olea europaea HOM05D000682 ORTHO05D000510 1.5e-07 60.5 85 41.2
Os01g0786700 Oryza sativa ssp. japonica HOM05D000682 ORTHO05D000510 1.5e-07 60.5 89 39.3
QL93p0073_1211 Quercus lobata HOM05D000682 ORTHO05D000510 1.5e-07 60.5 91 41.8
Sp2g02810 Schrenkiella parvula HOM05D000682 ORTHO05D000510 1.5e-07 60.5 90 44.4
THA.LOC104813356 Tarenaya hassleriana HOM05D000682 ORTHO05D000510 1.5e-07 60.5 97 41.2
COL.COLO4_31690 Corchorus olitorius HOM05D000682 ORTHO05D000510 2.0e-07 60.1 90 42.2
MD05G1336700 Malus domestica HOM05D000682 ORTHO05D000510 2.0e-07 60.1 88 40.9
Psat1g211440 Pisum sativum HOM05D000682 ORTHO05D000510 2.6e-07 59.7 94 41.5
Rhsim02G0114800 Rhododendron simsii HOM05D000682 ORTHO05D000510 2.6e-07 59.7 85 42.4
Sed0023653 Sechium edule HOM05D000682 ORTHO05D000510 2.6e-07 59.7 85 40.0
BcaB04g20367 Brassica carinata HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
BcaB07g31282 Brassica carinata HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
BcaC04g22348 Brassica carinata HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
A01p30600 Brassica napus HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
A09p16660 Brassica napus HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
C01p38990 Brassica napus HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
C09p20280 Brassica napus HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
BolC1t03849H Brassica oleracea HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
BolC9t54933H Brassica oleracea HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
BraA01t03192Z Brassica rapa HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
BraA09t37305Z Brassica rapa HOM05D000682 ORTHO05D000510 3.3e-07 59.3 92 43.5
Haze_06691 Corylus avellana HOM05D000682 ORTHO05D000510 3.3e-07 59.3 93 40.9
Lj6g0021175 Lotus japonicus HOM05D000682 ORTHO05D000510 3.3e-07 59.3 88 43.2
CSS0024951 Camellia sinensis var. sinensis HOM05D000682 ORTHO05D000510 4.4e-07 58.9 94 41.5
Ca_00204_v3 Cicer arietinum L. HOM05D000682 ORTHO05D000510 4.4e-07 58.9 94 39.4
Gohir.A10G016500 Gossypium hirsutum HOM05D000682 ORTHO05D000510 4.4e-07 58.9 159 33.3
Glyma.08G062600 Glycine max HOM05D000682 ORTHO05D000510 5.7e-07 58.5 152 34.2
Gohir.D10G016600 Gossypium hirsutum HOM05D000682 ORTHO05D000510 5.7e-07 58.5 90 42.2
Gorai.011G018500 Gossypium raimondii HOM05D000682 ORTHO05D000510 5.7e-07 58.5 90 42.2
Nn1g03707 Nelumbo nucifera HOM05D000682 ORTHO05D000510 5.7e-07 58.5 88 43.2
Rhsim02G0114600 Rhododendron simsii HOM05D000682 ORTHO05D000510 5.7e-07 58.5 90 40.0
Sabra11G0023900 Salix brachista HOM05D000682 ORTHO05D000510 5.7e-07 58.5 155 32.3
TWI38G2150 Tripterygium wilfordii HOM05D000682 ORTHO05D000510 5.7e-07 58.5 88 44.3
Nitab4.5_0002345g0010 Nicotiana tabacum HOM05D000682 ORTHO05D000510 7.4e-07 58.2 149 29.5
Nitab4.5_0009680g0010 Nicotiana tabacum HOM05D000682 ORTHO05D000510 7.4e-07 58.2 155 30.3
Gohir.A05G167900 Gossypium hirsutum HOM05D000682 ORTHO05D000510 9.7e-07 57.8 87 43.7
Gohir.D05G170900 Gossypium hirsutum HOM05D000682 ORTHO05D000510 9.7e-07 57.8 85 42.4
Medtr2g010740 Medicago truncatula HOM05D000682 ORTHO05D000510 9.7e-07 57.8 91 41.8
Potri.011G030900 Populus trichocarpa HOM05D000682 ORTHO05D000510 9.7e-07 57.8 89 40.4
PGR004G2418 Punica granatum HOM05D000682 ORTHO05D000510 9.7e-07 57.8 91 39.6
Actinidia05540 Actinidia chinensis HOM05D000682 ORTHO05D000510 1.3e-06 57.4 93 39.8
Duzib235G1270 Durio zibethinus HOM05D000682 ORTHO05D000510 1.3e-06 57.4 88 40.9
Gorai.009G176100 Gossypium raimondii HOM05D000682 ORTHO05D000510 1.3e-06 57.4 85 41.2
Gorai.011G018300 Gossypium raimondii HOM05D000682 ORTHO05D000510 1.3e-06 57.4 90 41.1
RcHm_v2.0_Chr5g0004461 Rosa chinensis HOM05D000682 ORTHO05D000510 1.3e-06 57.4 86 39.5
SGA_v2.0_scaffold89G27440 Striga asiatica HOM05D000682 ORTHO05D000510 1.3e-06 57.4 85 44.7
TPR.G32661 Trifolium pratense HOM05D000682 ORTHO05D000510 1.3e-06 57.4 89 40.4
vmacro03735 Vaccinium macrocarpon HOM05D000682 ORTHO05D000510 1.3e-06 57.4 93 40.9
Zm00001eb151220 Zea mays HOM05D000682 ORTHO05D000510 1.3e-06 57.4 90 40.0
AL7G32850 Arabidopsis lyrata HOM05D000682 ORTHO05D000510 1.7e-06 57.0 90 43.3
arahy.Tifrunner.gnm1.ann1.DJ1GHW Arachis hypogaea HOM05D000682 ORTHO05D000510 1.7e-06 57.0 88 44.3
ClCG03G005070 Citrullus lanatus HOM05D000682 ORTHO05D000510 1.7e-06 57.0 85 40.0
FvH4_3g02900 Fragaria vesca HOM05D000682 ORTHO05D000510 1.7e-06 57.0 85 40.0
FAN25G2920 Fragaria x ananassa HOM05D000682 ORTHO05D000510 1.7e-06 57.0 85 40.0
FAN25G2961 Fragaria x ananassa HOM05D000682 ORTHO05D000510 1.7e-06 57.0 85 40.0
Dinv18923 Davidia involucrata HOM05D000682 ORTHO05D000510 2.2e-06 56.6 93 38.7
Dinv18938 Davidia involucrata HOM05D000682 ORTHO05D000510 2.2e-06 56.6 93 38.7
Solyc02g079980.3 Solanum lycopersicum HOM05D000682 ORTHO05D000510 2.2e-06 56.6 91 38.5
Sopen02g024730 Solanum pennellii HOM05D000682 ORTHO05D000510 2.2e-06 56.6 91 38.5
THA.LOC104818905 Tarenaya hassleriana HOM05D000682 ORTHO05D000510 2.2e-06 56.6 88 43.2
SalBow8G3984 Salvia bowleyana HOM05D000682 ORTHO05D000510 2.8e-06 56.2 97 41.2
MSTRG.7248 Avicennia marina HOM05D000682 ORTHO05D000510 3.7e-06 55.8 91 40.7
Carub.0007s2017 Capsella rubella HOM05D000682 ORTHO05D000510 3.7e-06 55.8 85 43.5
AT4G21250 Arabidopsis thaliana HOM05D000682 ORTHO05D000510 6.3e-06 55.1 90 42.2
BcaC09g51240 Brassica carinata HOM05D000682 ORTHO05D000510 6.3e-06 55.1 85 43.5
BcaNung03830 Brassica carinata HOM05D000682 ORTHO05D000510 6.3e-06 55.1 85 43.5
A01p12610 Brassica napus HOM05D000682 ORTHO05D000510 6.3e-06 55.1 85 43.5
C01p15180 Brassica napus HOM05D000682 ORTHO05D000510 6.3e-06 55.1 85 43.5
BolC1t01468H Brassica oleracea HOM05D000682 ORTHO05D000510 6.3e-06 55.1 85 43.5
BraA01t01205Z Brassica rapa HOM05D000682 ORTHO05D000510 6.3e-06 55.1 85 43.5
Sabra11G0018400 Salix brachista HOM05D000682 ORTHO05D000510 6.3e-06 55.1 155 30.3
Sabra11G0024300 Salix brachista HOM05D000682 ORTHO05D000510 6.3e-06 55.1 155 30.3
THA.LOC104813355 Tarenaya hassleriana HOM05D000682 ORTHO05D000510 6.3e-06 55.1 97 39.2
arahy.Tifrunner.gnm1.ann1.0BBN6W Arachis hypogaea HOM05D000682 ORTHO05D000510 8.2e-06 54.7 88 42.0
CARHR227840 Cardamine hirsuta HOM05D000682 ORTHO05D000510 8.2e-06 54.7 85 43.5
GSVIVG01007340001 Vitis vinifera HOM05D000682 ORTHO05D000510 8.2e-06 54.7 92 33.7


User provided reference genes

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