Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 4.6e-183 644.4 324 100.0
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 2.2e-113 412.9 330 65.5
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 8.5e-113 411.0 326 65.0
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 1.5e-112 410.2 335 63.3
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 5.5e-112 408.3 331 64.4
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 5.5e-112 408.3 326 66.0
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 9.4e-112 407.5 328 65.9
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.2e-111 407.1 326 65.3
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.1e-111 406.4 330 64.8
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.1e-111 406.4 264 75.0
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 6.1e-111 404.8 325 63.4
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 6.1e-111 404.8 329 64.4
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 6.1e-111 404.8 328 63.4
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 8.0e-111 404.4 330 63.9
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.0e-110 404.1 330 63.9
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.0e-110 404.1 331 63.7
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 1.0e-110 404.1 329 63.2
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 1.8e-110 403.3 328 64.3
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.8e-110 403.3 326 64.7
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 2.3e-110 402.9 326 65.0
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 2.3e-110 402.9 324 64.8
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 2.3e-110 402.9 331 63.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.0e-110 402.5 330 64.5
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 4.0e-110 402.1 330 63.3
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 4.0e-110 402.1 326 65.0
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 8.8e-110 401.0 329 64.1
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.5e-109 400.2 331 62.8
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.5e-109 400.2 262 74.4
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 1.5e-109 400.2 260 74.6
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.0e-109 399.8 331 63.7
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 2.0e-109 399.8 275 71.6
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 2.0e-109 399.8 328 62.2
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 2.0e-109 399.8 330 62.1
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 2.6e-109 399.4 274 70.8
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.4e-109 399.1 262 74.0
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 4.4e-109 398.7 330 61.8
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 7.5e-109 397.9 338 63.6
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 7.5e-109 397.9 334 63.5
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 9.7e-109 397.5 328 62.2
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.3e-108 397.1 331 63.7
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 1.3e-108 397.1 332 63.9
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.3e-108 397.1 324 63.0
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.7e-108 396.7 277 70.4
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 2.2e-108 396.4 262 73.3
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 2.8e-108 396.0 324 63.3
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 2.8e-108 396.0 331 61.6
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 2.8e-108 396.0 332 63.3
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 2.8e-108 396.0 327 63.6
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.8e-108 396.0 336 63.1
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.8e-108 396.0 323 63.8
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.7e-108 395.6 263 74.5
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 3.7e-108 395.6 326 63.8
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 6.3e-108 394.8 334 62.9
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 8.3e-108 394.4 262 71.0
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 8.3e-108 394.4 331 62.8
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 8.3e-108 394.4 331 63.1
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 8.3e-108 394.4 331 61.9
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 8.3e-108 394.4 332 63.3
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 1.1e-107 394.0 333 62.8
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.8e-107 393.3 329 62.3
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.8e-107 393.3 328 62.5
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.8e-107 393.3 328 62.5
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.8e-107 393.3 326 62.0
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.8e-107 393.3 271 72.0
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.4e-107 392.9 329 62.9
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.4e-107 392.9 337 62.6
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 3.1e-107 392.5 326 62.3
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 3.1e-107 392.5 328 61.9
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 5.3e-107 391.7 333 61.6
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 5.3e-107 391.7 327 63.3
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 7.0e-107 391.3 327 61.8
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 7.0e-107 391.3 331 63.4
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 7.0e-107 391.3 288 69.8
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 7.0e-107 391.3 330 61.5
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 9.1e-107 391.0 286 67.1
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.6e-106 390.2 333 61.6
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.6e-106 390.2 328 63.7
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 2.0e-106 389.8 333 61.9
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.0e-106 389.8 327 61.5
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 2.7e-106 389.4 286 67.5
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.7e-106 389.4 331 61.3
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 2.7e-106 389.4 329 62.3
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 4.5e-106 388.7 329 61.7
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 5.9e-106 388.3 278 69.1
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 5.9e-106 388.3 328 61.6
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.0e-105 387.5 327 63.0
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.3e-105 387.1 262 69.8
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.7e-105 386.7 275 70.2
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 3.8e-105 385.6 326 63.8
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 8.5e-105 384.4 266 71.1
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.9e-104 383.3 324 61.7
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.5e-104 382.9 325 61.8
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 3.2e-104 382.5 271 69.4
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 7.2e-104 381.3 258 74.0
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 9.4e-104 380.9 260 71.2
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 3.6e-103 379.0 317 61.5
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 6.1e-103 378.3 327 60.2
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 2.3e-102 376.3 345 58.0
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 3.0e-102 375.9 329 61.4
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 6.8e-102 374.8 356 58.1
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 6.3e-100 368.2 326 59.5
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 3.1e-99 365.9 355 57.7
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 3.7e-92 342.4 390 49.2
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.7e-89 333.6 323 58.2
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 4.3e-88 328.9 296 59.1
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.2e-87 327.4 507 41.6
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 6.4e-84 315.1 327 54.1
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 2.5e-80 303.1 257 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 4.7e-79 298.9 263 56.7
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.4e-78 297.4 192 75.0
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 3.1e-78 296.2 187 76.5
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.4e-75 287.3 186 75.3
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 2.3e-73 280.0 175 76.0
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.9e-72 276.9 167 78.4
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 2.5e-72 276.6 175 76.0
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 4.9e-68 262.3 167 74.3
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 5.3e-54 215.7 209 54.5
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.1e-46 191.4 122 75.4
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.4e-46 190.3 119 78.2
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.5e-45 187.6 121 75.2
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.3e-44 184.5 119 74.8
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.6e-42 177.6 160 53.8
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.0e-41 173.3 113 74.3
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.1e-39 167.2 193 50.3
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.1e-39 167.2 222 45.9
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.9e-36 156.8 119 69.7
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.7e-34 150.2 95 80.0
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.3e-25 121.3 86 69.8
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.7e-20 104.4 72 70.8
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 1.6e-10 71.2 164 33.5
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 4.7e-10 69.7 74 51.4
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 6.1e-10 69.3 182 28.6
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 5.1e-09 66.2 108 32.4
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.5e-08 64.7 141 34.8
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.4e-06 58.2 174 32.2
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 1.4e-06 58.2 146 32.2
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 4.1e-06 56.6 178 30.3


User provided reference genes

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