Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 0.0e+00 1187.6 617 100.0
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 1.1e-262 909.8 615 75.0
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.5e-262 909.4 613 75.4
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 5.5e-262 907.5 613 75.2
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 5.5e-262 907.5 615 75.1
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 8.0e-261 903.7 615 75.4
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.6e-259 898.7 615 73.7
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.3e-259 898.3 628 73.2
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 7.5e-259 897.1 615 74.3
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 9.7e-259 896.7 615 74.1
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 6.3e-258 894.0 615 74.0
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.4e-257 892.1 614 73.6
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 9.1e-257 890.2 615 73.5
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 9.1e-257 890.2 615 74.1
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 2.7e-256 888.6 615 73.5
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.5e-256 887.9 615 73.8
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 7.7e-256 887.1 615 73.3
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.0e-255 886.7 615 73.2
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.7e-255 885.9 615 74.0
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 3.8e-255 884.8 615 73.5
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 5.0e-255 884.4 618 72.7
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 4.2e-254 881.3 615 73.2
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 4.2e-254 881.3 615 72.8
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 4.2e-254 881.3 615 73.3
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 5.5e-254 880.9 615 72.8
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 4.7e-253 877.9 615 71.9
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 8.0e-253 877.1 615 72.8
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 1.0e-252 876.7 615 73.5
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.4e-252 876.3 615 73.0
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 4.0e-252 874.8 616 72.2
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 2.6e-251 872.1 615 72.0
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.6e-251 872.1 615 72.2
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.6e-251 872.1 615 72.2
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.4e-251 871.7 615 71.5
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 4.4e-251 871.3 616 71.4
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 9.8e-251 870.2 615 72.4
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 9.8e-251 870.2 615 71.7
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 2.8e-250 868.6 615 72.0
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 2.8e-250 868.6 639 70.1
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 1.4e-249 866.3 615 71.7
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 5.4e-249 864.4 615 71.5
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.2e-248 863.2 625 70.4
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.6e-248 862.8 615 71.5
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.7e-248 862.1 625 70.9
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 5.9e-248 860.9 615 71.2
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 7.7e-248 860.5 615 71.2
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 5.0e-247 857.8 616 71.4
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 8.6e-247 857.1 618 70.7
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.9e-246 855.9 615 70.4
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 3.3e-246 855.1 615 70.9
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.1e-245 852.4 654 67.9
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 2.1e-245 852.4 616 70.6
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 4.7e-245 851.3 611 70.5
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.0e-244 850.1 614 71.7
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 6.8e-244 847.4 615 70.6
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.5e-243 846.3 648 68.1
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 4.4e-243 844.7 615 69.9
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 5.7e-243 844.3 642 67.8
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 7.5e-243 844.0 615 69.9
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.2e-242 842.4 617 70.8
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 6.3e-242 840.9 610 69.8
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 8.3e-242 840.5 615 70.4
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 7.0e-241 837.4 615 69.9
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.7e-239 832.8 617 69.5
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 6.6e-239 830.9 615 68.5
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 8.6e-239 830.5 682 65.4
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.5e-238 829.7 621 68.9
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 7.3e-238 827.4 616 69.2
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 7.3e-238 827.4 616 69.2
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.8e-236 822.8 750 59.9
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 2.3e-236 822.4 621 68.1
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.5e-235 819.7 617 67.4
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 5.8e-235 817.8 617 67.1
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.9e-234 814.7 615 68.1
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 3.2e-233 812.0 615 67.0
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 9.2e-233 810.4 615 70.4
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 4.6e-232 808.1 615 67.0
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 3.0e-231 805.4 575 71.1
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.8e-228 796.2 575 71.1
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.8e-228 796.2 542 74.9
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.6e-227 792.3 615 66.2
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.9e-226 788.9 615 66.2
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.4e-225 786.6 639 65.3
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 5.4e-225 784.6 615 65.2
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.1e-222 776.9 630 65.1
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.9e-222 776.2 600 65.3
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.1e-221 770.8 615 65.7
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.5e-219 766.5 602 64.8
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 4.0e-212 741.9 517 73.3
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.2e-211 740.3 576 67.2
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 1.7e-210 736.5 517 72.3
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 3.8e-210 735.3 615 60.0
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.3e-206 721.8 621 62.6
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 1.2e-203 713.8 511 72.0
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 4.6e-200 701.8 620 57.3
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 4.9e-194 681.8 617 58.0
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.8e-189 666.0 469 71.9
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 7.6e-187 657.9 444 74.8
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.5e-182 643.7 567 61.4
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.6e-176 623.6 646 49.7
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.6e-176 622.1 558 60.6
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.2e-161 572.4 619 50.2
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.4e-156 557.4 620 48.7
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 3.3e-150 536.2 364 74.5
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 5.2e-143 512.3 358 72.3
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.3e-141 507.7 491 59.3
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 6.5e-138 495.4 358 71.8
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.3e-133 481.1 339 73.5
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 2.8e-128 463.4 510 46.7
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 3.2e-124 449.9 390 61.8
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.7e-123 446.8 598 44.8
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-96 358.2 369 55.8
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.2e-92 343.6 284 64.8
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-91 341.7 455 47.5
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-68 265.4 188 69.7
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.7e-61 241.5 171 72.5
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 9.3e-60 235.7 175 68.6
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-48 198.7 149 67.8
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.3e-48 196.4 141 68.8
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.1e-47 193.7 134 73.1
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 5.1e-42 176.8 117 75.2
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.6e-38 165.2 135 59.3
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 4.5e-38 163.7 122 68.9
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 5.9e-38 163.3 151 59.6
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.2e-36 157.5 105 73.3
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 4.7e-35 153.7 107 70.1
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 3.7e-32 144.1 102 68.6
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.0e-26 125.9 101 65.3
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.8e-26 125.2 178 42.7
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 1.3e-24 119.0 134 52.2
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 8.3e-24 116.3 106 51.9
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.4e-23 115.5 87 67.8
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.6e-19 100.9 71 67.6
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.7e-16 92.0 58 72.4
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 4.9e-16 90.5 59 67.8
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 4.9e-16 90.5 59 67.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 3.1e-15 87.8 113 38.9
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 2.7e-14 84.7 117 51.3
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 2.7e-14 84.7 59 66.1
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 2.3e-13 81.6 49 71.4
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.1e-12 79.3 76 56.6
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 7.3e-12 76.6 42 81.0
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.6e-11 75.5 54 63.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 5.2e-10 70.5 56 55.4
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 2.9e-08 64.7 44 56.8
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-07 62.8 38 73.7
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 7.0e-07 60.1 80 43.8


User provided reference genes

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