Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017464 Vanilla planifolia HOM05D001135 ORTHO05D001005 3.1e-57 224.9 115 100.0
MBI15_g08405_MAGBIO Magnolia biondii HOM05D001135 ORTHO05D001005 1.1e-11 73.6 113 41.6
TAR636G2467 Trochodendron aralioides HOM05D001135 ORTHO05D001005 2.0e-11 72.8 101 42.6
Solyc03g117680.4 Solanum lycopersicum HOM05D001135 ORTHO05D001005 3.3e-11 72.0 83 51.8
PGSC0003DMG400014214 Solanum tuberosum HOM05D001135 ORTHO05D001005 5.7e-11 71.2 83 51.8
TAR383G0191 Trochodendron aralioides HOM05D001135 ORTHO05D001005 5.7e-11 71.2 103 39.8
Nitab4.5_0004738g0080 Nicotiana tabacum HOM05D001135 ORTHO05D001005 9.7e-11 70.5 88 48.9
Actinidia18262 Actinidia chinensis HOM05D001135 ORTHO05D001005 1.7e-10 69.7 94 47.9
Sopen03g036590 Solanum pennellii HOM05D001135 ORTHO05D001005 1.7e-10 69.7 84 52.4
CSS0015505 Camellia sinensis var. sinensis HOM05D001135 ORTHO05D001005 3.7e-10 68.6 103 40.8
CSS0039107 Camellia sinensis var. sinensis HOM05D001135 ORTHO05D001005 3.7e-10 68.6 103 40.8
DCAR_025540 Daucus carota HOM05D001135 ORTHO05D001005 4.8e-10 68.2 85 47.1
Nitab4.5_0002700g0030 Nicotiana tabacum HOM05D001135 ORTHO05D001005 6.3e-10 67.8 84 48.8
CiPaw.16G106700 Carya illinoinensis HOM05D001135 ORTHO05D001005 1.8e-09 66.2 102 40.2
Dinv42818 Davidia involucrata HOM05D001135 ORTHO05D001005 2.4e-09 65.9 103 39.8
Dinv43282 Davidia involucrata HOM05D001135 ORTHO05D001005 2.4e-09 65.9 103 39.8
Gorai.004G106800 Gossypium raimondii HOM05D001135 ORTHO05D001005 2.4e-09 65.9 92 44.6
Hma1.2p1_0329F.1_g127300 Hydrangea macrophylla HOM05D001135 ORTHO05D001005 2.4e-09 65.9 84 47.6
GSVIVG01023689001 Vitis vinifera HOM05D001135 ORTHO05D001005 3.1e-09 65.5 103 41.7
Gohir.D08G099000 Gossypium hirsutum HOM05D001135 ORTHO05D001005 4.1e-09 65.1 92 44.6
QL02p094197 Quercus lobata HOM05D001135 ORTHO05D001005 4.1e-09 65.1 97 42.3
Cc04_g05310 Coffea canephora HOM05D001135 ORTHO05D001005 5.3e-09 64.7 91 45.1
Gohir.A08G087900 Gossypium hirsutum HOM05D001135 ORTHO05D001005 5.3e-09 64.7 95 44.2
Prupe.1G102300 Prunus persica HOM05D001135 ORTHO05D001005 5.3e-09 64.7 103 43.7
Cfa020784 Carpinus fangiana HOM05D001135 ORTHO05D001005 6.9e-09 64.3 96 43.8
COL.COLO4_05402 Corchorus olitorius HOM05D001135 ORTHO05D001005 6.9e-09 64.3 94 45.7
Nn8g40088 Nelumbo nucifera HOM05D001135 ORTHO05D001005 6.9e-09 64.3 101 38.6
Actinidia20937 Actinidia chinensis HOM05D001135 ORTHO05D001005 9.1e-09 63.9 97 41.2
Aqoxy7G03328 Aquilegia oxysepala HOM05D001135 ORTHO05D001005 9.1e-09 63.9 105 41.0
MD00G1164000 Malus domestica HOM05D001135 ORTHO05D001005 9.1e-09 63.9 104 38.5
Hund26438 Selenicereus undatus HOM05D001135 ORTHO05D001005 9.1e-09 63.9 101 37.6
Cfa001856 Carpinus fangiana HOM05D001135 ORTHO05D001005 1.5e-08 63.2 89 46.1
Ciclev10007906m.g Citrus clementina HOM05D001135 ORTHO05D001005 2.0e-08 62.8 89 44.9
Haze_16690 Corylus avellana HOM05D001135 ORTHO05D001005 2.0e-08 62.8 89 46.1
Duzib168G0750 Durio zibethinus HOM05D001135 ORTHO05D001005 2.0e-08 62.8 94 41.5
Haze_19140 Corylus avellana HOM05D001135 ORTHO05D001005 2.6e-08 62.4 106 40.6
Duzib150G1425 Durio zibethinus HOM05D001135 ORTHO05D001005 2.6e-08 62.4 94 44.7
SGA_v2.0_scaffold74G24594 Striga asiatica HOM05D001135 ORTHO05D001005 2.6e-08 62.4 85 44.7
CSS0028633 Camellia sinensis var. sinensis HOM05D001135 ORTHO05D001005 3.4e-08 62.0 94 43.6
Cpa.g.sc199.17 Carica papaya HOM05D001135 ORTHO05D001005 3.4e-08 62.0 94 44.7
Dinv21427 Davidia involucrata HOM05D001135 ORTHO05D001005 4.5e-08 61.6 84 47.6
Solyc07g005990.3 Solanum lycopersicum HOM05D001135 ORTHO05D001005 4.5e-08 61.6 113 39.8
Migut.J01391 Erythranthe guttata HOM05D001135 ORTHO05D001005 5.9e-08 61.2 100 39.0
Sopen07g002130 Solanum pennellii HOM05D001135 ORTHO05D001005 5.9e-08 61.2 113 40.7
Duzib187G0751 Durio zibethinus HOM05D001135 ORTHO05D001005 7.7e-08 60.8 92 44.6
Duzib235G0183 Durio zibethinus HOM05D001135 ORTHO05D001005 7.7e-08 60.8 88 47.7
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.0e-07 60.5 111 38.7
EL10Ac8g18907 Beta vulgaris HOM05D001135 ORTHO05D001005 1.0e-07 60.5 98 38.8
Hma1.2p1_0028F.1_g017750 Hydrangea macrophylla HOM05D001135 ORTHO05D001005 1.0e-07 60.5 103 40.8
SGA_v2.0_scaffold515G52662 Striga asiatica HOM05D001135 ORTHO05D001005 1.0e-07 60.5 95 43.2
Atru.chr7.356 Acer truncatum HOM05D001135 ORTHO05D001005 1.3e-07 60.1 84 44.0
CsaV3_2G007700 Cucumis sativus L. HOM05D001135 ORTHO05D001005 1.3e-07 60.1 99 39.4
Lj9C491T6 Lonicera japonica HOM05D001135 ORTHO05D001005 1.3e-07 60.1 114 38.6
Dinv23268 Davidia involucrata HOM05D001135 ORTHO05D001005 1.7e-07 59.7 92 42.4
Cpa.g.c28380.2 Carica papaya HOM05D001135 ORTHO05D001005 2.2e-07 59.3 99 43.4
Nitab4.5_0006744g0040 Nicotiana tabacum HOM05D001135 ORTHO05D001005 2.2e-07 59.3 103 38.8
PGSC0003DMG400011210 Solanum tuberosum HOM05D001135 ORTHO05D001005 2.2e-07 59.3 106 43.4
MELO3C004115.2 Cucumis melo HOM05D001135 ORTHO05D001005 2.9e-07 58.9 104 39.4
FAN22G2220 Fragaria x ananassa HOM05D001135 ORTHO05D001005 2.9e-07 58.9 117 37.6
RcHm_v2.0_Chr4g0405561 Rosa chinensis HOM05D001135 ORTHO05D001005 2.9e-07 58.9 102 36.3
vmacro13050 Vaccinium macrocarpon HOM05D001135 ORTHO05D001005 2.9e-07 58.9 88 44.3
MSTRG.6161 Avicennia marina HOM05D001135 ORTHO05D001005 3.8e-07 58.5 102 40.2
CANSAT11G0276 Cannabis sativa HOM05D001135 ORTHO05D001005 3.8e-07 58.5 84 45.2
CiPaw.01G256600 Carya illinoinensis HOM05D001135 ORTHO05D001005 3.8e-07 58.5 93 43.0
MD16G1259500 Malus domestica HOM05D001135 ORTHO05D001005 3.8e-07 58.5 101 38.6
PSO063G4052 Papaver somniferum HOM05D001135 ORTHO05D001005 3.8e-07 58.5 84 46.4
Rhsim01G0023700 Rhododendron simsii HOM05D001135 ORTHO05D001005 3.8e-07 58.5 89 43.8
Thecc.06G046700 Theobroma cacao HOM05D001135 ORTHO05D001005 3.8e-07 58.5 88 46.6
Rhsim08G0203000 Rhododendron simsii HOM05D001135 ORTHO05D001005 5.0e-07 58.2 85 42.4
Sed0006273 Sechium edule HOM05D001135 ORTHO05D001005 6.5e-07 57.8 105 39.0
MSTRG.4669 Avicennia marina HOM05D001135 ORTHO05D001005 8.5e-07 57.4 91 40.7
FvH4_4g10180 Fragaria vesca HOM05D001135 ORTHO05D001005 8.5e-07 57.4 105 36.2
FAN07G1157 Fragaria x ananassa HOM05D001135 ORTHO05D001005 8.5e-07 57.4 104 37.5
FAN12G0084 Fragaria x ananassa HOM05D001135 ORTHO05D001005 8.5e-07 57.4 105 36.2
Nitab4.5_0001036g0160 Nicotiana tabacum HOM05D001135 ORTHO05D001005 8.5e-07 57.4 103 37.9
Potri.006G180500 Populus trichocarpa HOM05D001135 ORTHO05D001005 8.5e-07 57.4 112 34.8
Thecc.09G154000 Theobroma cacao HOM05D001135 ORTHO05D001005 8.5e-07 57.4 80 48.8
Sabra06G0137400 Salix brachista HOM05D001135 ORTHO05D001005 1.1e-06 57.0 110 38.2
SalBow1G6428 Salvia bowleyana HOM05D001135 ORTHO05D001005 1.1e-06 57.0 94 40.4
Actinidia08933 Actinidia chinensis HOM05D001135 ORTHO05D001005 1.4e-06 56.6 82 47.6
Peaxi162Scf00563g00415 Petunia axillaris HOM05D001135 ORTHO05D001005 1.4e-06 56.6 88 42.0
Manes.11G069400 Manihot esculenta HOM05D001135 ORTHO05D001005 1.9e-06 56.2 95 37.9
Potri.018G102800 Populus trichocarpa HOM05D001135 ORTHO05D001005 1.9e-06 56.2 89 44.9
SGA_v2.0_scaffold45G17007 Striga asiatica HOM05D001135 ORTHO05D001005 1.9e-06 56.2 98 38.8
Sc18g0003150 Simmondsia chinensis HOM05D001135 ORTHO05D001005 2.5e-06 55.8 93 39.8
Ciclev10027000m.g Citrus clementina HOM05D001135 ORTHO05D001005 3.2e-06 55.5 87 43.7
COL.COLO4_26778 Corchorus olitorius HOM05D001135 ORTHO05D001005 3.2e-06 55.5 89 46.1
FAN17G2483 Fragaria x ananassa HOM05D001135 ORTHO05D001005 3.2e-06 55.5 104 36.5
Potri.003G185050 Populus trichocarpa HOM05D001135 ORTHO05D001005 3.2e-06 55.5 100 39.0
Sabra18G0088300 Salix brachista HOM05D001135 ORTHO05D001005 3.2e-06 55.5 84 46.4
arahy.Tifrunner.gnm1.ann1.JM6T1X Arachis hypogaea HOM05D001135 ORTHO05D001005 4.2e-06 55.1 101 38.6
MSTRG.11220 Avicennia marina HOM05D001135 ORTHO05D001005 4.2e-06 55.1 86 41.9
unitig_0.g353 Utricularia gibba HOM05D001135 ORTHO05D001005 4.2e-06 55.1 94 40.4
DCAR_016317 Daucus carota HOM05D001135 ORTHO05D001005 5.5e-06 54.7 82 43.9
Prupe.3G103700 Prunus persica HOM05D001135 ORTHO05D001005 5.5e-06 54.7 103 38.8
PGR114G0001 Punica granatum HOM05D001135 ORTHO05D001005 5.5e-06 54.7 90 43.3
PGR142G0228 Punica granatum HOM05D001135 ORTHO05D001005 5.5e-06 54.7 90 43.3
unitig_52.g17021 Utricularia gibba HOM05D001135 ORTHO05D001005 5.5e-06 54.7 91 38.5
MELO3C024885.2 Cucumis melo HOM05D001135 ORTHO05D001005 7.2e-06 54.3 88 39.8
FAN12G1115 Fragaria x ananassa HOM05D001135 ORTHO05D001005 7.2e-06 54.3 105 35.2
Manes.06G031800 Manihot esculenta HOM05D001135 ORTHO05D001005 7.2e-06 54.3 83 44.6
ATR0580G439 Amborella trichopoda HOM05D001135 ORTHO05D001005 9.4e-06 53.9 87 41.4
Sabra03G0135400 Salix brachista HOM05D001135 ORTHO05D001005 9.4e-06 53.9 98 39.8
Hund08958 Selenicereus undatus HOM05D001135 ORTHO05D001005 9.4e-06 53.9 96 39.6


User provided reference genes

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