Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 1.1e-184 649.8 327 100.0
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 1.3e-121 440.3 348 66.4
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 1.3e-121 440.3 338 66.3
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 1.7e-121 439.9 338 66.0
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 6.1e-119 431.4 327 65.4
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 8.9e-118 427.6 335 64.5
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 8.9e-118 427.6 327 66.7
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.8e-117 424.9 329 65.3
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 7.5e-117 424.5 330 64.5
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 1.7e-116 423.3 334 64.4
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 2.2e-116 422.9 331 64.4
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.9e-116 422.5 329 65.0
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.7e-116 422.2 329 65.0
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.9e-116 421.8 329 64.7
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 8.3e-116 421.0 336 64.3
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 5.4e-115 418.3 329 64.7
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 1.2e-114 417.2 335 64.8
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 7.8e-114 414.5 330 64.2
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 1.3e-113 413.7 325 64.0
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 2.3e-113 412.9 331 61.6
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 3.9e-113 412.1 334 62.9
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 4.3e-112 408.7 329 63.5
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 2.1e-111 406.4 331 62.2
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 3.6e-111 405.6 332 63.9
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 4.7e-111 405.2 333 62.8
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 1.8e-110 403.3 331 64.4
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 5.2e-110 401.7 327 62.4
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 5.2e-110 401.7 335 62.4
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 6.8e-110 401.4 326 62.0
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 8.9e-110 401.0 317 65.6
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.2e-109 400.6 326 62.0
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 1.3e-108 397.1 309 64.4
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 1.7e-108 396.7 328 62.5
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 6.4e-108 394.8 331 61.9
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 8.3e-108 394.4 334 62.3
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 1.1e-107 394.0 331 62.2
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 1.1e-107 394.0 331 62.8
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 1.4e-107 393.7 331 62.5
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 2.4e-107 392.9 328 60.7
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 4.1e-107 392.1 329 60.2
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 1.6e-106 390.2 289 67.5
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 3.5e-106 389.0 376 55.6
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 3.5e-106 389.0 338 58.9
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 3.5e-106 389.0 331 61.9
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 4.6e-106 388.7 320 63.1
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 4.6e-106 388.7 343 59.2
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 1.9e-104 383.3 322 62.1
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 3.3e-104 382.5 309 63.4
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 5.6e-104 381.7 322 61.2
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.3e-104 381.3 328 60.1
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 1.2e-103 380.6 330 61.8
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 2.1e-103 379.8 318 62.6
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 1.1e-102 377.5 309 62.8
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 1.4e-102 377.1 364 57.7
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 1.8e-102 376.7 307 62.9
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 2.3e-102 376.3 307 62.2
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 6.8e-102 374.8 311 62.1
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 1.5e-101 373.6 327 56.9
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 5.8e-101 371.7 303 62.7
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.5e-101 371.3 328 58.8
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 9.9e-101 370.9 334 57.8
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 9.9e-101 370.9 335 60.3
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 6.4e-100 368.2 330 59.7
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 2.1e-98 363.2 337 55.8
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 3.5e-98 362.5 343 57.7
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 6.6e-97 358.2 332 56.9
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 9.6e-96 354.4 343 56.6
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 1.4e-94 350.5 328 56.1
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 1.2e-93 347.4 273 64.1
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 3.8e-92 342.4 281 64.4
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 4.2e-91 339.0 291 57.7
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.1e-89 332.0 326 54.9
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 1.1e-88 330.9 339 53.4
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 2.0e-85 320.1 284 60.6
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 3.8e-84 315.8 332 50.3
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 8.4e-84 314.7 299 57.5
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 7.1e-83 311.6 332 49.7
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 9.3e-83 311.2 230 66.1
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.0e-81 307.8 274 60.9
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 2.2e-76 290.0 327 48.3
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 2.9e-76 289.7 217 63.6
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.1e-75 287.7 227 64.8
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 6.0e-74 282.0 332 49.1
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 3.9e-73 279.3 217 62.7
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.4e-70 270.8 318 48.1
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.0e-68 264.6 328 48.5
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 1.0e-68 264.6 222 61.7
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.9e-68 263.1 329 49.5
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 1.1e-67 261.2 326 48.2
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.9e-66 255.0 329 47.1
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 9.0e-62 241.5 374 40.9
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.2e-60 236.9 197 59.9
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 2.9e-60 236.5 281 49.8
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 1.1e-56 224.6 185 60.5
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.6e-50 204.1 182 58.2
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 1.4e-49 201.1 178 59.0
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 3.9e-49 199.5 165 60.0
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 6.7e-49 198.7 274 41.2
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 1.4e-46 191.0 279 41.2
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 2.4e-46 190.3 180 53.3
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 6.9e-46 188.7 126 70.6
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 2.7e-34 150.2 298 36.9
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 8.0e-34 148.7 149 53.0
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 3.1e-30 136.7 237 38.4
Medtr2g105710 Medicago truncatula HOM05D007396 ORTHO05D009228 1.1e-19 101.7 69 66.7
Actinidia31121 Actinidia chinensis HOM05D007396 ORTHO05D009228 3.6e-18 96.7 69 69.6
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 6.1e-18 95.9 102 53.9
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 2.8e-15 87.0 97 47.4
Cre07.g325721 Chlamydomonas reinhardtii HOM05D007396 ORTHO05D009228 9.1e-14 82.0 348 25.0
SEGI_36165 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 9.8e-08 62.0 41 61.0


User provided reference genes

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