Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 1.5e-133 479.6 252 100.0
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 1.6e-58 230.3 246 52.8
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 2.3e-57 226.5 244 51.2
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 6.7e-57 224.9 248 51.6
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 1.5e-56 223.8 245 49.0
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 2.6e-56 223.0 247 51.0
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 4.4e-56 222.2 247 49.8
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 7.4e-56 221.5 250 51.6
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 1.3e-55 220.7 245 48.2
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 2.2e-55 219.9 248 50.0
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 4.8e-55 218.8 254 49.2
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 8.2e-55 218.0 245 49.4
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 3.1e-54 216.1 248 48.4
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 4.1e-54 215.7 245 47.8
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 5.3e-54 215.3 246 49.6
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 1.6e-53 213.8 250 46.8
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 2.0e-53 213.4 245 48.2
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 4.5e-53 212.2 249 48.2
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 4.5e-53 212.2 252 46.8
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 4.5e-53 212.2 248 48.8
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 5.9e-53 211.8 245 47.8
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 7.7e-53 211.5 245 48.6
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 7.7e-53 211.5 246 47.6
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.0e-52 211.1 245 47.8
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.3e-52 210.7 249 49.0
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.3e-52 210.7 251 50.2
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 2.2e-52 209.9 247 47.0
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 6.5e-52 208.4 251 49.4
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 6.5e-52 208.4 244 48.8
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 6.5e-52 208.4 247 47.8
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 8.5e-52 208.0 250 46.4
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 1.1e-51 207.6 249 45.8
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 1.1e-51 207.6 245 47.8
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 1.5e-51 207.2 251 49.8
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 1.5e-51 207.2 247 47.4
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 1.9e-51 206.8 247 46.6
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 7.2e-51 204.9 249 45.8
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 7.2e-51 204.9 248 50.0
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 1.2e-50 204.1 246 47.6
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 1.6e-50 203.8 247 47.8
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 2.1e-50 203.4 246 46.3
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.1e-50 203.4 255 48.6
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 3.6e-50 202.6 252 44.0
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 8.0e-50 201.4 255 48.6
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.0e-49 201.1 259 46.3
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 1.8e-49 200.3 249 46.6
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 1.8e-49 200.3 251 48.2
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.3e-49 199.9 252 47.6
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 4.0e-49 199.1 249 46.6
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 6.8e-49 198.4 256 43.8
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 6.8e-49 198.4 250 48.0
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 8.8e-49 198.0 262 44.3
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 1.2e-48 197.6 268 44.0
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 1.5e-48 197.2 214 54.2
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.5e-48 197.2 251 46.6
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 1.5e-48 197.2 247 45.3
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 2.6e-48 196.4 247 46.6
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 5.7e-48 195.3 255 45.5
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 5.7e-48 195.3 247 47.4
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 7.5e-48 194.9 255 40.4
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 1.3e-47 194.1 245 44.1
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 4.8e-47 192.2 254 45.3
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 4.8e-47 192.2 249 44.2
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 6.3e-47 191.8 246 44.7
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 8.3e-47 191.4 247 44.5
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 1.1e-46 191.0 260 44.6
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 1.4e-46 190.7 250 47.6
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 1.4e-46 190.7 250 47.6
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 1.4e-46 190.7 248 46.4
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 1.8e-46 190.3 249 46.2
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 3.1e-46 189.5 275 41.8
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 4.1e-46 189.1 249 45.8
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 4.1e-46 189.1 248 46.4
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 7.0e-46 188.3 259 42.1
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 1.2e-45 187.6 248 44.8
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 3.5e-45 186.0 250 44.0
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 5.9e-45 185.3 247 43.7
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 5.9e-45 185.3 248 42.7
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 1.3e-44 184.1 257 43.6
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 8.5e-44 181.4 246 43.5
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 1.1e-43 181.0 247 43.7
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 2.5e-43 179.9 249 44.2
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 4.2e-43 179.1 248 43.5
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 9.4e-43 177.9 257 42.8
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 2.1e-42 176.8 249 43.8
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 3.0e-41 172.9 193 45.6
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 5.2e-41 172.2 249 39.8
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 1.2e-40 171.0 250 42.8
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 4.4e-40 169.1 261 42.1
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 5.7e-40 168.7 242 42.6
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 6.3e-39 165.2 273 39.6
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 6.3e-39 165.2 274 40.1
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 1.8e-38 163.7 251 39.8
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.2e-34 151.0 252 41.7
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.2e-34 151.0 151 50.3
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 3.6e-34 149.4 194 44.8
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.3e-33 146.7 295 34.2
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 1.3e-31 141.0 248 37.9
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.8e-31 139.8 109 75.2
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 7.0e-30 135.2 158 51.3
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 1.5e-27 127.5 236 38.6
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 4.3e-27 125.9 226 36.7
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.0e-24 117.1 146 52.7
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.4e-22 110.2 164 40.2
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 5.6e-11 72.4 122 42.6
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.0e-08 63.9 90 37.8


User provided reference genes

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