Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.4e-128 463.0 234 100.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.5e-61 239.6 235 54.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 4.2e-61 238.8 205 58.0
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 4.2e-61 238.8 192 61.5
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 4.2e-61 238.8 226 54.4
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.3e-59 233.0 240 49.6
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.3e-59 233.0 236 51.3
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.1e-59 231.9 225 52.9
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 5.1e-59 231.9 230 54.3
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.1e-58 230.7 227 54.6
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 2.5e-58 229.6 230 51.3
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 4.3e-58 228.8 232 51.3
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 9.6e-58 227.6 234 52.1
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.3e-57 227.3 240 49.2
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.3e-57 227.3 228 51.3
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.6e-57 226.9 229 52.8
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.6e-57 226.9 227 52.9
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.6e-57 226.9 231 50.2
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.1e-57 226.5 228 51.3
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.1e-57 226.5 228 51.3
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.8e-57 226.1 228 51.3
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 4.8e-57 225.3 226 51.3
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 4.8e-57 225.3 226 52.7
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 6.3e-57 224.9 190 58.9
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.1e-56 224.2 231 51.9
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.4e-56 223.8 226 52.2
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.4e-56 223.0 226 50.4
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.4e-56 223.0 206 54.4
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.4e-56 223.0 204 54.9
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 3.1e-56 222.6 232 51.7
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 3.1e-56 222.6 228 51.3
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 4.1e-56 222.2 229 50.7
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 4.1e-56 222.2 216 51.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 5.3e-56 221.9 227 52.0
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 5.3e-56 221.9 199 54.8
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 6.9e-56 221.5 230 52.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 9.0e-56 221.1 200 56.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.5e-55 220.3 211 53.1
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 2.0e-55 219.9 226 50.9
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.6e-55 219.5 204 54.4
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 3.4e-55 219.2 232 50.0
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 4.5e-55 218.8 227 53.3
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 7.6e-55 218.0 233 50.6
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 7.6e-55 218.0 226 49.6
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.0e-54 217.6 226 50.9
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.0e-54 217.6 234 50.0
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.0e-54 217.6 234 49.1
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.3e-54 217.2 210 53.8
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.7e-54 216.9 230 51.7
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.2e-54 216.5 226 49.1
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.9e-54 216.1 183 57.9
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 3.8e-54 215.7 227 51.5
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 6.5e-54 214.9 182 56.6
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.1e-53 214.2 176 59.7
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.4e-53 213.8 231 49.4
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.4e-53 213.8 192 53.1
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.9e-53 213.4 226 48.7
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.9e-53 213.4 229 51.1
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 1.9e-53 213.4 226 51.8
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.9e-53 213.4 234 48.3
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 2.5e-53 213.0 226 50.0
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.5e-53 213.0 226 50.0
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.5e-53 213.0 213 52.6
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 3.2e-53 212.6 229 51.1
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 4.2e-53 212.2 226 49.6
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.2e-53 211.5 235 47.7
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.2e-52 210.7 209 54.1
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.6e-52 210.3 228 49.1
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.6e-52 210.3 231 48.9
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 4.6e-52 208.8 182 54.4
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 4.6e-52 208.8 179 57.5
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 6.1e-52 208.4 203 52.2
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 7.9e-52 208.0 201 51.2
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.0e-51 207.6 182 55.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.0e-51 207.6 195 51.8
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.3e-51 207.2 231 47.2
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.3e-51 207.2 203 52.2
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.3e-51 207.2 203 52.2
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.3e-51 207.2 192 53.1
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 3.0e-51 206.1 201 50.7
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 3.9e-51 205.7 201 50.7
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 5.1e-51 205.3 227 48.9
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 6.7e-51 204.9 182 54.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 3.3e-50 202.6 231 46.3
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 3.3e-50 202.6 192 51.0
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 4.3e-50 202.2 245 45.3
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 9.7e-50 201.1 226 49.1
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.8e-49 199.5 226 47.3
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 2.8e-49 199.5 231 45.9
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 2.8e-49 199.5 202 50.0
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.7e-49 199.1 229 48.5
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.1e-48 197.6 231 45.5
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.1e-48 195.7 198 49.0
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 4.1e-48 195.7 215 50.2
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.3e-48 195.3 193 48.7
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 9.1e-48 194.5 229 48.0
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 9.1e-48 194.5 203 50.2
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 9.1e-48 194.5 231 45.0
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.0e-47 193.4 183 53.0
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.5e-47 192.2 152 61.8
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.0e-46 191.0 234 43.2
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 5.0e-46 188.7 183 52.5
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 6.5e-46 188.3 198 51.0
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.5e-46 188.0 232 46.1
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.9e-45 186.8 197 46.7
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.2e-44 184.1 192 51.0
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.6e-44 183.7 195 49.2
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.1e-44 183.3 229 45.4
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.4e-43 180.6 204 49.0
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 3.0e-43 179.5 202 48.5
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.0e-43 179.5 202 48.5
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.0e-43 179.5 202 48.5
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 3.9e-43 179.1 260 42.3
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 5.1e-43 178.7 258 39.5
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 5.1e-43 178.7 252 38.9
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.1e-42 177.6 185 50.8
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.3e-41 174.1 187 48.7
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.2e-41 173.3 198 48.5
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.3e-41 171.8 220 45.0
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 9.1e-40 167.9 152 55.9
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.2e-39 167.5 242 42.6
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.5e-39 167.2 138 60.1
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.4e-39 166.0 142 55.6
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 4.5e-39 165.6 181 49.7
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.8e-38 162.5 155 50.3
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 6.5e-38 161.8 149 55.7
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 8.5e-38 161.4 231 42.0
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 4.2e-37 159.1 228 40.8
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 2.7e-36 156.4 193 44.6
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.6e-31 140.6 191 42.4
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.9e-30 136.3 185 41.1
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 5.0e-30 135.6 184 41.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.5e-29 134.0 191 41.4
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.8e-27 127.1 130 49.2
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.5e-18 97.4 88 56.8
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 5.7e-18 95.5 146 39.0
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.3e-17 94.4 76 61.8
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 2.2e-17 93.6 115 43.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.4e-16 90.1 95 46.3
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 8.8e-11 71.6 177 29.9
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.7e-09 67.4 84 40.5


User provided reference genes

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