Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017263 Vanilla planifolia HOM05D000278 ORTHO05D004673 1.3e-61 239.6 124 100.0
CSS0037161 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 3.4e-54 214.9 116 94.8
Lj6g0017523 Lotus japonicus HOM05D000278 ORTHO05D004673 4.5e-54 214.5 116 94.0
Eucgr.F01711 Eucalyptus grandis HOM05D000278 ORTHO05D004673 7.6e-54 213.8 116 94.0
Eucgr.F03537 Eucalyptus grandis HOM05D000278 ORTHO05D004673 7.6e-54 213.8 116 94.8
QL02p013553 Quercus lobata HOM05D000278 ORTHO05D004673 7.6e-54 213.8 116 94.0
arahy.Tifrunner.gnm1.ann1.456QL1 Arachis hypogaea HOM05D000278 ORTHO05D004673 1.0e-53 213.4 116 94.0
arahy.Tifrunner.gnm1.ann1.N7I05Z Arachis hypogaea HOM05D000278 ORTHO05D004673 1.0e-53 213.4 116 94.0
Cc01_g07800 Coffea canephora HOM05D000278 ORTHO05D004673 1.0e-53 213.4 116 93.1
DCAR_009520 Daucus carota HOM05D000278 ORTHO05D004673 1.0e-53 213.4 116 94.0
Duzib093G1085 Durio zibethinus HOM05D000278 ORTHO05D004673 1.3e-53 213.0 116 93.1
Duzib116G0529 Durio zibethinus HOM05D000278 ORTHO05D004673 1.3e-53 213.0 116 93.1
TPR.G31895 Trifolium pratense HOM05D000278 ORTHO05D004673 1.3e-53 213.0 116 94.0
Cpa.g.sc26.235 Carica papaya HOM05D000278 ORTHO05D004673 1.7e-53 212.6 116 92.2
Ca_07625_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 1.7e-53 212.6 116 94.0
Dinv31912 Davidia involucrata HOM05D000278 ORTHO05D004673 1.7e-53 212.6 116 93.1
Lalb_Chr19g0124741 Lupinus albus HOM05D000278 ORTHO05D004673 1.7e-53 212.6 116 93.1
PSO541G0609 Papaver somniferum HOM05D000278 ORTHO05D004673 1.7e-53 212.6 116 93.1
PSO675G6493 Papaver somniferum HOM05D000278 ORTHO05D004673 1.7e-53 212.6 116 93.1
TAR381G1660 Trochodendron aralioides HOM05D000278 ORTHO05D004673 1.7e-53 212.6 116 93.1
Aqoxy6G01859 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 2.2e-53 212.2 116 94.0
Aqoxy7G00805 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 2.2e-53 212.2 116 94.0
Ciclev10000836m.g Citrus clementina HOM05D000278 ORTHO05D004673 2.2e-53 212.2 116 93.1
Dinv32530 Davidia involucrata HOM05D000278 ORTHO05D004673 2.2e-53 212.2 116 93.1
Dinv39570 Davidia involucrata HOM05D000278 ORTHO05D004673 2.2e-53 212.2 116 92.2
Prupe.1G357200 Prunus persica HOM05D000278 ORTHO05D004673 2.2e-53 212.2 116 92.2
Thecc.08G054800 Theobroma cacao HOM05D000278 ORTHO05D004673 2.2e-53 212.2 116 92.2
TAR625G1357 Trochodendron aralioides HOM05D000278 ORTHO05D004673 2.2e-53 212.2 116 93.1
Lalb_Chr03g0043101 Lupinus albus HOM05D000278 ORTHO05D004673 2.9e-53 211.8 116 92.2
Medtr7g113470 Medicago truncatula HOM05D000278 ORTHO05D004673 2.9e-53 211.8 116 93.1
Psat3g130480 Pisum sativum HOM05D000278 ORTHO05D004673 2.9e-53 211.8 116 93.1
SGA_v2.0_scaffold25G11193 Striga asiatica HOM05D000278 ORTHO05D004673 2.9e-53 211.8 116 92.2
Ah.07g202860 Amaranthus hybridus HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 92.2
Ah.13g073410 Amaranthus hybridus HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 92.2
AL6G32440 Arabidopsis lyrata HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 93.1
CARHR191960 Cardamine hirsuta HOM05D000278 ORTHO05D004673 3.8e-53 211.5 117 92.3
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 3.8e-53 211.5 116 94.0
Haze_22737 Corylus avellana HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 94.0
Gohir.D05G256700 Gossypium hirsutum HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 92.2
Gorai.009G268200 Gossypium raimondii HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 92.2
Lsat_1_v5_gn_3_23880 Lactuca sativa HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 92.2
Nn6g31844 Nelumbo nucifera HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 92.2
Peaxi162Scf00892g00123 Petunia axillaris HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 90.5
TWI56G0512 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 93.1
Zm00001eb127430 Zea mays HOM05D000278 ORTHO05D004673 3.8e-53 211.5 116 93.1
Lj1g0004523 Lotus japonicus HOM05D000278 ORTHO05D004673 5.0e-53 211.1 116 93.1
MD08G1005100 Malus domestica HOM05D000278 ORTHO05D004673 5.0e-53 211.1 116 92.2
MD15G1004500 Malus domestica HOM05D000278 ORTHO05D004673 5.0e-53 211.1 116 92.2
Medtr7g067470 Medicago truncatula HOM05D000278 ORTHO05D004673 5.0e-53 211.1 116 93.1
CsaV3_2G001340 Cucumis sativus L. HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 92.2
HanXRQChr02g0048731 Helianthus annuus HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 92.2
HanXRQChr05g0150641 Helianthus annuus HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 92.2
Lj4A877T44 Lonicera japonica HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 92.2
MBI08_g05384_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 92.2
PGR083G0799 Punica granatum HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 93.1
SalBow6G3216 Salvia bowleyana HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 91.4
Sed0026774 Sechium edule HOM05D000201 ORTHO05D004673 6.5e-53 210.7 116 92.2
Sc09g0003140 Simmondsia chinensis HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 91.4
THA.LOC104826462 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 91.4
TPR.G4726 Trifolium pratense HOM05D000278 ORTHO05D004673 6.5e-53 210.7 116 92.2
EL10Ac3g06108 Beta vulgaris HOM05D000278 ORTHO05D004673 8.4e-53 210.3 116 91.4
CiPaw.08G070800 Carya illinoinensis HOM05D000278 ORTHO05D004673 8.4e-53 210.3 116 92.2
Os03g0619400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 8.4e-53 210.3 116 92.2
Os05g0556700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 8.4e-53 210.3 116 92.2
Potri.001G341100 Populus trichocarpa HOM05D000278 ORTHO05D004673 8.4e-53 210.3 116 91.4
Sp6g23630 Schrenkiella parvula HOM05D000278 ORTHO05D004673 8.4e-53 210.3 116 91.4
Hund12360 Selenicereus undatus HOM05D000278 ORTHO05D004673 8.4e-53 210.3 116 91.4
unitig_744.g24606 Utricularia gibba HOM05D000278 ORTHO05D004673 8.4e-53 210.3 116 91.4
BcaB08g37325 Brassica carinata HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
BcaC03g13811 Brassica carinata HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
BcaC04g19481 Brassica carinata HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
A10p19170 Brassica napus HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
BNapus_Darmor_BZH_scaffold_38p01290 Brassica napus HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
C02p10490 Brassica napus HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
C03p11870 Brassica napus HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
C09p55210 Brassica napus HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
BolC9t58390H Brassica oleracea HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
BraA02t05601Z Brassica rapa HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
BraA10t43992Z Brassica rapa HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
Ca_05203_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
ECA240G2245 Erigeron canadensis HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
FvH4_2g37790 Fragaria vesca HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.1e-52 209.9 116 91.4
FAN20G0278 Fragaria x ananassa HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 91.4
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.1e-52 209.9 116 91.4
THA.LOC104816947 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 1.1e-52 209.9 116 90.5
Actinidia37961 Actinidia chinensis HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 92.2
AUR62002414 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 90.5
AUR62023775 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 90.5
ClCG11G001640 Citrullus lanatus HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 91.4
MELO3C004636.2 Cucumis melo HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 91.4
Lsat_1_v5_gn_5_47521 Lactuca sativa HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 91.4
Nn5g30892 Nelumbo nucifera HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 91.4
Nitab4.5_0001163g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 90.5
Nitab4.5_0012306g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 90.5
GSVIVG01008708001 Vitis vinifera HOM05D000278 ORTHO05D004673 1.4e-52 209.5 116 90.5
MSTRG.22358 Avicennia marina HOM05D000278 ORTHO05D004673 1.9e-52 209.1 116 89.7
CiPaw.07G141600 Carya illinoinensis HOM05D000278 ORTHO05D004673 1.9e-52 209.1 116 91.4
COL.COLO4_26052 Corchorus olitorius HOM05D000278 ORTHO05D004673 1.9e-52 209.1 116 90.5
Gohir.D05G184500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.9e-52 209.1 116 90.5
Gorai.009G190000 Gossypium raimondii HOM05D000278 ORTHO05D004673 1.9e-52 209.1 116 90.5
Nitab4.5_0005092g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.9e-52 209.1 116 89.7
THA.LOC104800468 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 1.9e-52 209.1 116 90.5
Aa31LG1G13870 Aethionema arabicum HOM05D000278 ORTHO05D004673 2.5e-52 208.8 116 90.5
BcaB05g22804 Brassica carinata HOM05D000278 ORTHO05D004673 2.5e-52 208.8 116 90.5
A03p10340 Brassica napus HOM05D000278 ORTHO05D004673 2.5e-52 208.8 116 90.5
BolC3t13657H Brassica oleracea HOM05D000278 ORTHO05D004673 2.5e-52 208.8 116 90.5
BraA03t10345Z Brassica rapa HOM05D000278 ORTHO05D004673 2.5e-52 208.8 116 90.5
Rhsim04G0232000 Rhododendron simsii HOM05D000278 ORTHO05D004673 2.5e-52 208.8 116 91.4
Sed0016101 Sechium edule HOM05D000278 ORTHO05D004673 3.2e-52 208.4 116 91.4
AT5G20890 Arabidopsis thaliana HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 91.4
BolC2t07080H Brassica oleracea HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 89.7
Carub.0006s1918 Capsella rubella HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 91.4
Thhalv10013239m.g Eutrema salsugineum HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 90.5
Glyma.11G185500 Glycine max HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 91.4
Glyma.12G087300 Glycine max HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 91.4
Gohir.A05G255100 Gossypium hirsutum HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 90.5
Phvul.011G092200 Phaseolus vulgaris HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 91.4
VMungo1127G1082 Vigna mungo HOM05D000278 ORTHO05D004673 4.2e-52 208.0 116 91.4
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 5.5e-52 207.6 116 89.7
Migut.C00506 Erythranthe guttata HOM05D000278 ORTHO05D004673 5.5e-52 207.6 116 90.5
Gohir.A05G181500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 5.5e-52 207.6 116 89.7
Nitab4.5_0000329g0270 Nicotiana tabacum HOM05D000278 ORTHO05D004673 5.5e-52 207.6 116 89.7
Potri.006G128600 Populus trichocarpa HOM05D000278 ORTHO05D004673 5.5e-52 207.6 116 91.4
Solyc11g069000.2 Solanum lycopersicum HOM05D000278 ORTHO05D004673 5.5e-52 207.6 116 89.7
Sopen11g027710 Solanum pennellii HOM05D000278 ORTHO05D004673 5.5e-52 207.6 116 89.7
TWI36G1689 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 5.5e-52 207.6 116 91.4
AagrBONN_evm.TU.Sc2ySwM_228.4022 Anthoceros agrestis HOM05D000278 ORTHO05D004673 7.2e-52 207.2 116 87.9
CAN.G546.19 Capsicum annuum HOM05D000278 ORTHO05D004673 7.2e-52 207.2 116 88.8
RhsimUnG0194000 Rhododendron simsii HOM05D000278 ORTHO05D004673 7.2e-52 207.2 116 90.5
SGA_v2.0_scaffold275G46553 Striga asiatica HOM05D000278 ORTHO05D004673 7.2e-52 207.2 116 90.5
Actinidia29778 Actinidia chinensis HOM05D000278 ORTHO05D004673 1.2e-51 206.5 116 90.5
Atru.chr13.180 Acer truncatum HOM05D000278 ORTHO05D004673 1.6e-51 206.1 116 90.5
Manes.05G141000 Manihot esculenta HOM05D000278 ORTHO05D004673 2.7e-51 205.3 116 89.7
Rhsim06G0057200 Rhododendron simsii HOM05D000278 ORTHO05D004673 2.7e-51 205.3 116 89.7
RcHm_v2.0_Chr6g0303921 Rosa chinensis HOM05D000278 ORTHO05D004673 2.7e-51 205.3 116 89.7
Duzib041G0210 Durio zibethinus HOM05D000278 ORTHO05D004673 3.5e-51 204.9 116 89.7
SMO116G0467 Selaginella moellendorffii HOM05D000278 ORTHO05D004673 4.6e-51 204.5 116 87.1
ATR0049G084 Amborella trichopoda HOM05D000278 ORTHO05D004673 6.1e-51 204.1 116 87.9
MSTRG.24226 Avicennia marina HOM05D000278 ORTHO05D004673 7.9e-51 203.8 116 87.9
Pp3c6_15940 Physcomitrium patens HOM05D000278 ORTHO05D004673 7.9e-51 203.8 116 87.1
Manes.18G007600 Manihot esculenta HOM05D000278 ORTHO05D004673 1.3e-50 203.0 116 87.9
Mapoly0071s0007 Marchantia polymorpha HOM05D000278 ORTHO05D004673 2.3e-50 202.2 116 85.3
Zm00001eb333890 Zea mays HOM05D000278 ORTHO05D004673 3.9e-50 201.4 111 92.8
Pp3c5_16830 Physcomitrium patens HOM05D000278 ORTHO05D004673 8.7e-50 200.3 116 86.2
Duzib133G0408 Durio zibethinus HOM05D000278 ORTHO05D004673 1.1e-49 199.9 116 88.8
PGSC0003DMG400019637 Solanum tuberosum HOM05D000278 ORTHO05D004673 2.5e-49 198.7 115 86.1
CBR_g20448 Chara braunii HOM05D000278 ORTHO05D004673 3.3e-49 198.4 116 84.5
Cre09.g416750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004673 3.7e-48 194.9 116 82.8
PRCOL_00000789 Prasinoderma coloniale HOM05D000278 ORTHO05D004673 1.5e-46 189.5 116 81.0
CSS0001931 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 6.5e-45 184.1 116 84.5
Cfa026985 Carpinus fangiana HOM05D000278 ORTHO05D004673 2.5e-44 182.2 116 75.9
Haze_26336 Corylus avellana HOM05D000278 ORTHO05D004673 3.3e-41 171.8 116 72.4
MCO14G488 Micromonas commoda HOM05D000278 ORTHO05D004673 5.7e-41 171.0 116 73.3
CAN.G1432.19 Capsicum annuum HOM05D000278 ORTHO05D004673 1.2e-38 163.3 115 73.9
vmacro19453 Vaccinium macrocarpon HOM05D000278 ORTHO05D004673 3.3e-33 145.2 116 70.7
CAN.G1001.51 Capsicum annuum HOM05D000278 ORTHO05D004673 1.3e-32 143.3 78 89.7
Zm00001eb130780 Zea mays HOM05D000278 ORTHO05D004673 1.1e-28 130.2 73 86.3
BcaB05g24246 Brassica carinata HOM05D028788 ORTHO05D024317 9.4e-28 127.1 72 84.7
Nn3g20772 Nelumbo nucifera HOM05D000513 ORTHO05D011790 4.7e-27 124.8 70 85.7
MBI15_g40394_MAGBIO Magnolia biondii HOM05D000030 ORTHO05D010488 2.3e-26 122.5 70 84.3
HanXRQChr05g0150651 Helianthus annuus HOM05D000278 ORTHO05D004673 1.3e-24 116.7 59 91.5
Nn1g03634 Nelumbo nucifera HOM05D000278 ORTHO05D004673 7.0e-23 110.9 59 88.1
Cc10_g11400 Coffea canephora HOM05D000278 ORTHO05D004673 1.7e-21 106.3 79 72.2
Nn2g11831 Nelumbo nucifera HOM05D000278 ORTHO05D004673 1.7e-21 106.3 59 84.7
PGSC0003DMG400007161 Solanum tuberosum HOM05D000278 ORTHO05D024317 5.0e-21 104.8 66 77.3
PGSC0003DMG400012727 Solanum tuberosum HOM05D000278 ORTHO05D004673 1.1e-20 103.6 115 54.8
Hma1.2p1_1100F.1_g257110 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 1.2e-19 100.1 112 53.6
Hma1.2p1_1100F.1_g257140 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 3.0e-18 95.5 53 84.9
Hma1.2p1_0149F.1_g066520 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 2.6e-17 92.4 90 56.7
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 5.5e-12 74.7 42 85.7
Nn4g25474 Nelumbo nucifera HOM05D000278 ORTHO05D004673 6.1e-11 71.2 87 49.4
Zm00001eb210250 Zea mays HOM05D000278 ORTHO05D004673 2.0e-06 56.2 36 83.3
Cre01.g026550 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004794 7.7e-06 54.3 103 32.0
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 7.7e-06 54.3 32 75.0


User provided reference genes

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