Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.1e-72 276.6 144 100.0
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.0e-57 226.9 136 90.4
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.4e-51 206.5 126 85.7
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.4e-51 206.5 132 82.6
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.4e-51 206.5 130 83.8
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.2e-51 205.3 125 88.0
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 3.2e-51 205.3 132 84.1
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 4.1e-51 204.9 126 84.1
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 4.1e-51 204.9 132 83.3
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.0e-51 204.1 133 80.5
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.2e-50 203.4 126 84.1
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.6e-50 203.0 132 81.1
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.6e-50 203.0 126 81.7
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 2.0e-50 202.6 124 83.9
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.0e-50 202.6 125 84.0
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.0e-50 202.6 124 86.3
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-50 202.2 130 83.1
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-50 202.2 130 83.1
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 2.7e-50 202.2 128 82.8
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 2.7e-50 202.2 125 84.0
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 2.7e-50 202.2 124 85.5
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 3.5e-50 201.8 125 84.0
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 3.5e-50 201.8 132 81.8
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 3.5e-50 201.8 124 83.9
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 4.6e-50 201.4 118 85.6
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 6.0e-50 201.1 112 90.2
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 6.0e-50 201.1 129 84.5
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 7.8e-50 200.7 126 82.5
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.0e-49 200.3 126 81.7
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.0e-49 200.3 131 79.4
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.0e-49 200.3 125 84.0
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.3e-49 199.9 126 81.7
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.3e-49 199.9 130 81.5
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.3e-49 199.9 131 79.4
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.3e-49 199.9 126 82.5
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.7e-49 199.5 124 83.9
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.7e-49 199.5 126 82.5
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 2.3e-49 199.1 126 83.3
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-49 199.1 126 84.1
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 3.0e-49 198.7 132 81.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.0e-49 198.7 112 89.3
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 5.0e-49 198.0 133 80.5
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 6.6e-49 197.6 133 77.4
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 6.6e-49 197.6 125 81.6
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 8.6e-49 197.2 132 80.3
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 8.6e-49 197.2 134 79.9
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 8.6e-49 197.2 126 81.0
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.1e-48 196.8 112 88.4
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.1e-48 196.8 115 87.8
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-48 196.8 132 80.3
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.1e-48 196.8 131 78.6
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-48 196.4 130 80.8
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.9e-48 196.1 126 80.2
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.9e-48 196.1 125 81.6
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.9e-48 196.1 125 81.6
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.5e-48 195.7 132 77.3
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 2.5e-48 195.7 134 79.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 2.5e-48 195.7 134 79.1
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.5e-48 195.7 126 79.4
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.5e-48 195.7 126 79.4
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 3.3e-48 195.3 126 81.0
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 3.3e-48 195.3 118 85.6
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.3e-48 195.3 130 78.5
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 5.6e-48 194.5 126 79.4
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 5.6e-48 194.5 118 85.6
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 5.6e-48 194.5 122 82.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 5.6e-48 194.5 122 82.8
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 7.3e-48 194.1 124 81.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 9.5e-48 193.7 126 79.4
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 1.2e-47 193.4 123 80.5
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.2e-47 193.4 126 78.6
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.2e-47 193.4 112 85.7
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.2e-47 193.4 112 87.5
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 2.1e-47 192.6 126 78.6
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 2.1e-47 192.6 126 81.7
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.1e-47 192.6 118 83.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 2.8e-47 192.2 132 77.3
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.8e-47 192.2 130 79.2
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.6e-47 191.8 118 82.2
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.6e-47 191.8 126 77.8
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.6e-47 191.8 132 77.3
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 4.7e-47 191.4 126 77.8
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 4.7e-47 191.4 126 77.8
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 4.7e-47 191.4 126 77.8
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 4.7e-47 191.4 126 77.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 4.7e-47 191.4 122 81.1
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.7e-47 191.4 118 83.1
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 4.7e-47 191.4 130 78.5
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 4.7e-47 191.4 112 87.5
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 6.2e-47 191.0 127 78.0
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.2e-47 191.0 127 78.0
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 6.2e-47 191.0 127 78.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 6.2e-47 191.0 127 78.0
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 6.2e-47 191.0 126 80.2
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 8.0e-47 190.7 127 77.2
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 8.0e-47 190.7 120 80.0
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 8.0e-47 190.7 132 78.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.1e-46 190.3 126 79.4
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.1e-46 190.3 102 100.0
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.8e-46 189.5 126 78.6
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.8e-46 189.5 128 78.1
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.3e-46 189.1 129 79.1
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 2.3e-46 189.1 122 81.1
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.3e-46 189.1 132 75.8
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.1e-46 188.7 129 77.5
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 6.8e-46 187.6 130 75.4
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-45 186.0 126 79.4
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 2.6e-45 185.7 166 65.1
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.4e-45 185.3 132 75.0
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 3.4e-45 185.3 124 77.4
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.4e-45 184.9 132 75.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 7.5e-45 184.1 145 69.7
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 2.7e-42 175.6 112 78.6
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 7.8e-42 174.1 159 63.5
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 4.3e-40 168.3 168 59.5
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.8e-39 165.6 112 77.7
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.8e-38 162.9 123 67.5
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.3e-38 162.5 112 73.2
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 2.3e-38 162.5 168 56.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 5.2e-38 161.4 187 51.9
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 8.9e-38 160.6 127 66.1
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 6.4e-36 154.5 132 65.2
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 2.7e-34 149.1 126 69.0
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 2.3e-33 146.0 112 60.7
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-32 142.9 126 66.7
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.9e-32 142.9 112 63.4
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 2.8e-31 139.0 92 78.3
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 3.6e-31 138.7 84 81.0
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.4e-30 136.7 83 84.3
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.8e-30 136.3 89 82.0
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.7e-28 129.8 92 73.9
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 3.8e-28 128.6 69 94.2
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 8.4e-28 127.5 75 85.3
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.2e-27 125.6 141 55.3
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 4.1e-27 125.2 69 89.9
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.7e-26 122.5 69 89.9
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.7e-25 119.8 69 87.0
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-23 113.2 69 84.1
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 4.7e-23 111.7 75 78.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-22 110.2 70 78.6
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.5e-21 106.7 110 47.3
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.2e-18 97.1 64 78.1
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 1.5e-16 90.1 124 38.7
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.2e-13 80.5 56 71.4
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.4e-13 79.0 107 38.3
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 2.4e-11 72.8 67 64.2
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 3.2e-11 72.4 57 66.7
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.2e-11 72.0 69 62.3
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.3e-11 70.9 49 69.4
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.1e-10 69.7 113 34.5
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.0e-09 67.4 34 91.2
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.5e-08 63.5 33 84.8


User provided reference genes

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