Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 3.8e-44 181.0 86 100.0
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.0e-36 156.4 84 85.7
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.3e-36 156.0 84 85.7
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 3.8e-36 154.5 86 83.7
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 6.5e-36 153.7 86 84.9
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 6.5e-36 153.7 84 85.7
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 6.5e-36 153.7 84 85.7
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 6.5e-36 153.7 86 84.9
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 8.5e-36 153.3 86 84.9
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 8.5e-36 153.3 86 83.7
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 83.3
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 85 85.9
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.4e-35 152.5 86 84.9
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.4e-35 152.5 85 85.9
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 2.5e-35 151.8 85 84.7
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 2.5e-35 151.8 85 84.7
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 3.2e-35 151.4 86 83.7
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 3.2e-35 151.4 80 86.2
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 5.5e-35 150.6 86 81.4
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 5.5e-35 150.6 85 81.2
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.5e-35 150.6 74 93.2
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 7.2e-35 150.2 85 82.4
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 9.4e-35 149.8 86 81.4
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 9.4e-35 149.8 87 82.8
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 1.2e-34 149.4 74 90.5
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 1.2e-34 149.4 86 81.4
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 1.2e-34 149.4 86 81.4
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 1.2e-34 149.4 86 81.4
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 1.2e-34 149.4 86 82.6
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 1.6e-34 149.1 84 82.1
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 82.6
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 82.6
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 2.1e-34 148.7 85 85.9
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.7e-34 148.3 84 81.0
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 2.7e-34 148.3 84 82.1
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 2.7e-34 148.3 86 80.2
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 2.7e-34 148.3 86 80.2
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 2.7e-34 148.3 74 91.9
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.7e-34 148.3 86 80.2
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.7e-34 148.3 86 82.6
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 2.7e-34 148.3 86 82.6
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 3.6e-34 147.9 74 89.2
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 3.6e-34 147.9 86 83.7
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 4.7e-34 147.5 86 77.9
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 4.7e-34 147.5 86 77.9
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 4.7e-34 147.5 84 81.0
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 4.7e-34 147.5 84 84.5
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 82.4
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 82.4
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 82.4
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 82.4
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 82.4
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 84.7
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 84.7
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 84.7
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 4.7e-34 147.5 85 80.0
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 4.7e-34 147.5 85 84.7
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 4.7e-34 147.5 84 79.8
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 6.1e-34 147.1 86 79.1
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 6.1e-34 147.1 86 82.6
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 6.1e-34 147.1 85 83.5
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 6.1e-34 147.1 86 79.1
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 6.1e-34 147.1 85 83.5
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 8.0e-34 146.7 84 78.6
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 8.0e-34 146.7 84 79.8
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 8.0e-34 146.7 86 79.1
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 8.0e-34 146.7 86 76.7
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 8.0e-34 146.7 86 79.1
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 8.0e-34 146.7 85 81.2
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 8.0e-34 146.7 86 79.1
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 1.0e-33 146.4 85 84.7
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.0e-33 146.4 86 79.1
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 1.4e-33 146.0 74 87.8
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.4e-33 146.0 85 83.5
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.4e-33 146.0 85 83.5
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.4e-33 146.0 85 83.5
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.4e-33 146.0 87 78.2
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.4e-33 146.0 84 78.6
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 1.8e-33 145.6 86 77.9
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 1.8e-33 145.6 86 76.7
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 1.8e-33 145.6 86 77.9
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 1.8e-33 145.6 86 77.9
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.8e-33 145.6 86 77.9
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.8e-33 145.6 86 80.2
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 2.3e-33 145.2 81 84.0
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 2.3e-33 145.2 86 80.2
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 2.3e-33 145.2 86 80.2
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 2.3e-33 145.2 86 80.2
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.3e-33 145.2 86 80.2
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.3e-33 145.2 84 81.0
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 3.9e-33 144.4 87 78.2
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 3.9e-33 144.4 86 77.9
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 3.9e-33 144.4 74 86.5
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 3.9e-33 144.4 86 79.1
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 3.9e-33 144.4 73 87.7
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 5.2e-33 144.1 84 79.8
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 5.2e-33 144.1 78 83.3
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.7e-33 143.7 85 80.0
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 6.7e-33 143.7 85 80.0
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 6.7e-33 143.7 86 80.2
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 8.8e-33 143.3 74 85.1
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 8.8e-33 143.3 84 79.8
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.5e-32 142.5 85 77.6
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-32 142.1 85 78.8
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 3.3e-32 141.4 74 85.1
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 3.3e-32 141.4 69 88.4
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 7.4e-32 140.2 74 83.8
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.3e-31 139.4 98 70.4
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 3.7e-31 137.9 81 76.5
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 3.7e-31 137.9 65 90.8
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 4.1e-30 134.4 106 64.2
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 7.0e-30 133.7 63 92.1
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 9.1e-30 133.3 97 68.0
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 9.1e-30 133.3 62 91.9
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 9.1e-30 133.3 62 91.9
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.0e-29 132.1 61 91.8
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 2.6e-29 131.7 61 91.8
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 5.9e-29 130.6 70 84.3
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 7.7e-29 130.2 60 91.7
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 1.7e-28 129.0 66 89.4
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 6.1e-26 120.6 84 67.9
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 5.7e-24 114.0 50 94.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.7e-24 114.0 76 71.1
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 7.5e-24 113.6 50 92.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 1.1e-22 109.8 50 90.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.6e-21 105.9 50 86.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 1.0e-20 103.2 49 85.7
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 2.2e-20 102.1 75 62.7
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 6.5e-20 100.5 64 65.6
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 6.5e-20 100.5 64 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.5e-19 99.4 84 57.1
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.5e-19 98.6 86 59.3
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.1e-18 95.5 62 77.4
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 2.7e-13 78.6 75 49.3
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 1.4e-06 56.2 29 79.3
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 1.8e-06 55.8 23 91.3


User provided reference genes

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