Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.5e-22 107.8 52 100.0
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.8e-09 65.1 31 96.8
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 4.1e-09 63.9 39 74.4
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 5.4e-09 63.5 31 93.5
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 9.1e-09 62.8 31 93.5
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.2e-08 62.4 31 90.3
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-08 62.4 31 90.3
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-08 62.4 31 90.3
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-08 62.4 31 90.3
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.2e-08 62.4 31 90.3
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.6e-08 62.0 31 90.3
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.7e-08 61.2 31 87.1
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.7e-08 61.2 31 87.1
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.7e-08 61.2 31 87.1
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 2.7e-08 61.2 31 87.1
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.7e-08 61.2 31 87.1
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 2.7e-08 61.2 31 87.1
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.5e-08 60.8 31 90.3
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.5e-08 60.8 31 87.1
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 3.5e-08 60.8 31 87.1
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.5e-08 60.8 31 87.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.5e-08 60.8 31 87.1
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 3.5e-08 60.8 31 90.3
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 3.5e-08 60.8 31 90.3
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 3.5e-08 60.8 31 87.1
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 4.5e-08 60.5 31 87.1
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 4.5e-08 60.5 31 87.1
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 4.5e-08 60.5 31 87.1
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.5e-08 60.5 33 81.8
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.5e-08 60.5 31 87.1
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.5e-08 60.5 31 87.1
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 5.9e-08 60.1 32 84.4
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 83.9
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 5.9e-08 60.1 31 87.1
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 5.9e-08 60.1 31 87.1
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 90.3
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 7.7e-08 59.7 31 87.1
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 83.9
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 83.9
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 83.9
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 83.9
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 83.9
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.0e-07 59.3 39 71.8
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 83.9
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 83.9
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 87.1
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.0e-07 59.3 31 83.9
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.3e-07 58.9 31 87.1
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-07 58.9 31 83.9
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.3e-07 58.9 31 87.1
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.3e-07 58.9 31 87.1
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.3e-07 58.9 31 87.1
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.3e-07 58.9 31 83.9
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 87.1
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 83.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 83.9
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 83.9
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 83.9
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 83.9
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 87.1
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 87.1
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.7e-07 58.5 31 87.1
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 80.6
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 2.2e-07 58.2 31 83.9
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 83.9
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.2e-07 58.2 31 87.1
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 2.9e-07 57.8 31 80.6
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 2.9e-07 57.8 31 83.9
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 3.8e-07 57.4 31 83.9
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 3.8e-07 57.4 31 83.9
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.8e-07 57.4 31 83.9
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.8e-07 57.4 31 80.6
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 5.0e-07 57.0 31 80.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 5.0e-07 57.0 31 80.6
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 6.5e-07 56.6 31 80.6
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 6.5e-07 56.6 31 74.2
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 8.5e-07 56.2 30 80.0
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 8.5e-07 56.2 30 83.3
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 8.5e-07 56.2 31 80.6
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 8.5e-07 56.2 31 80.6
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.1e-06 55.8 31 80.6
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.1e-06 55.8 31 80.6
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.1e-06 55.8 31 80.6
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.1e-06 55.8 31 80.6
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-06 55.5 29 82.8
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.5e-06 55.5 32 78.1
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.5e-06 55.5 31 80.6
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.9e-06 55.1 31 77.4
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.9e-06 55.1 31 77.4
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.9e-06 55.1 31 83.9
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.9e-06 55.1 31 83.9
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.5e-06 54.7 31 77.4
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.5e-06 54.7 31 77.4
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 2.5e-06 54.7 31 77.4
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 3.2e-06 54.3 31 77.4
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 3.2e-06 54.3 31 77.4
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 9.5e-06 52.8 31 74.2


User provided reference genes

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