Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 2.4e-198 695.3 339 100.0
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.2e-104 384.0 270 67.0
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 6.4e-103 378.3 318 59.4
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 8.4e-103 377.9 338 58.6
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.4e-102 376.3 269 66.5
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.2e-101 374.0 338 57.4
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 2.7e-101 372.9 271 64.2
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.7e-101 372.9 271 64.2
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 7.8e-101 371.3 338 58.3
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.0e-100 370.9 342 57.0
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 6.6e-100 368.2 315 58.7
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.1e-99 367.5 313 59.1
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 2.5e-99 366.3 333 56.2
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 4.3e-99 365.5 350 52.9
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 5.6e-99 365.2 325 56.9
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.6e-99 364.4 289 61.2
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 9.6e-99 364.4 269 63.9
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.6e-98 363.6 318 57.2
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 4.7e-98 362.1 271 63.5
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 6.2e-98 361.7 270 63.0
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 8.1e-98 361.3 307 58.3
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 8.1e-98 361.3 272 62.9
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.1e-97 360.9 287 60.6
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.1e-97 360.9 268 63.4
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.1e-97 360.9 297 59.6
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.4e-97 360.5 351 53.8
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.8e-97 360.1 271 62.4
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.8e-97 360.1 334 55.7
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.8e-97 360.1 290 60.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.8e-97 360.1 322 55.6
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 2.4e-97 359.8 265 64.9
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 3.1e-97 359.4 274 61.3
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 5.3e-97 358.6 350 54.3
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 5.3e-97 358.6 296 58.8
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 5.3e-97 358.6 331 56.2
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 6.9e-97 358.2 283 60.4
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.5e-96 357.1 296 58.8
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.5e-96 357.1 274 60.9
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.0e-96 356.7 282 60.3
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.0e-96 356.7 288 60.1
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.0e-96 356.7 288 60.1
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.6e-96 356.3 295 57.3
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 7.6e-96 354.8 285 60.0
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 9.9e-96 354.4 261 64.8
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 9.9e-96 354.4 279 60.6
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.2e-95 353.2 283 61.5
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.9e-95 352.8 354 53.4
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.9e-95 352.8 281 59.8
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.9e-94 350.1 299 56.5
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.9e-94 350.1 303 57.1
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.9e-94 350.1 269 61.0
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.4e-94 349.7 285 58.9
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 3.2e-94 349.4 330 55.2
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 7.1e-94 348.2 280 60.4
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 7.1e-94 348.2 294 58.2
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 1.2e-93 347.4 276 59.1
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.6e-93 347.1 322 55.0
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.6e-93 347.1 316 55.4
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 2.1e-93 346.7 283 60.8
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.1e-93 346.7 274 59.1
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 4.6e-93 345.5 273 60.4
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.0e-92 344.4 304 55.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.3e-92 344.0 287 57.5
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.3e-92 344.0 305 55.7
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 2.3e-92 343.2 273 59.0
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 3.0e-92 342.8 321 53.6
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 3.0e-92 342.8 260 62.7
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 5.1e-92 342.0 332 54.2
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 5.1e-92 342.0 280 58.2
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.9e-91 340.1 307 55.4
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.9e-91 340.1 274 58.8
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 4.3e-91 339.0 331 52.9
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 7.3e-91 338.2 282 57.8
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 7.3e-91 338.2 326 50.9
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 1.6e-90 337.0 325 54.2
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.6e-90 337.0 273 59.3
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 3.6e-90 335.9 306 56.5
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 4.8e-90 335.5 273 59.3
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.8e-90 335.5 344 50.9
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 6.2e-90 335.1 309 54.0
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.1e-90 334.7 353 51.0
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.1e-89 334.3 283 57.2
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.4e-89 334.0 319 54.2
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.4e-89 334.0 306 55.9
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.1e-89 332.8 334 51.8
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 5.3e-89 332.0 305 55.1
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 5.3e-89 332.0 283 58.0
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.9e-89 331.6 272 59.6
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 6.9e-89 331.6 270 58.9
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 9.0e-89 331.3 274 56.9
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.0e-88 330.1 286 57.0
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.0e-88 330.1 306 55.9
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 4.5e-88 328.9 322 52.8
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 5.8e-88 328.6 279 56.3
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.7e-87 327.0 347 50.4
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.7e-87 327.0 272 58.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 6.4e-87 325.1 300 55.7
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 8.4e-87 324.7 323 52.6
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 8.4e-87 324.7 352 48.6
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 2.4e-86 323.2 300 55.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 7.1e-86 321.6 273 57.1
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.6e-85 320.5 328 51.5
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 3.5e-85 319.3 278 56.1
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 3.5e-85 319.3 281 55.2
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 7.4e-83 311.6 305 53.8
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.6e-82 310.5 298 53.7
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 4.8e-82 308.9 329 52.6
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 3.1e-81 306.2 229 63.3
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 8.4e-79 298.1 282 54.6
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.0e-76 291.2 229 60.3
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.3e-76 290.8 335 50.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.3e-76 290.0 227 61.7
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 5.1e-76 288.9 269 53.2
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.1e-75 287.7 277 52.7
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.5e-75 287.3 340 46.2
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 5.6e-75 285.4 200 68.0
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.8e-74 283.1 376 43.6
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 8.2e-74 281.6 312 48.4
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.2e-74 281.6 316 47.5
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.1e-73 281.2 334 46.7
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 6.9e-73 278.5 291 50.5
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 5.8e-72 275.4 362 43.4
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 7.6e-72 275.0 278 49.6
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.3e-71 274.2 274 50.0
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.2e-71 273.5 300 47.0
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.2e-71 273.5 300 47.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 4.6e-69 265.8 295 46.8
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.3e-68 264.2 295 47.1
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.3e-68 264.2 306 45.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 3.3e-67 259.6 293 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 4.1e-65 252.7 274 46.4
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.3e-65 252.3 256 48.8
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.4e-64 249.6 336 43.5
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.2e-62 243.0 291 47.1
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.3e-60 236.9 326 40.8
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 2.0e-59 233.8 184 61.4
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.0e-56 223.8 262 45.4
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.5e-54 216.9 200 55.0
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.1e-53 212.2 222 47.7
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 4.8e-50 202.6 162 60.5
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 7.0e-49 198.7 162 59.9
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.2e-48 198.0 196 51.5
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.3e-47 194.5 145 64.1
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.4e-46 191.0 145 63.4
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.6e-45 187.6 183 52.5
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 1.8e-44 184.1 507 28.2
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 5.2e-44 182.6 143 60.8
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.4e-43 179.5 180 50.6
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 4.4e-43 179.5 143 60.1
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.7e-43 179.1 180 50.6
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 5.7e-43 179.1 232 46.1
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 1.3e-42 177.9 181 53.0
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.3e-42 177.9 302 36.4
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 3.7e-42 176.4 258 38.0
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 3.1e-41 173.3 118 61.0
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.6e-40 171.0 165 55.8
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 3.5e-40 169.9 115 64.3
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 8.5e-39 165.2 107 67.3
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.9e-38 164.1 120 62.5
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 5.5e-38 162.5 124 62.1
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 1.5e-35 154.5 416 28.4
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 3.3e-35 153.3 108 61.1
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 2.2e-34 150.6 130 56.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.6e-29 134.4 126 52.4
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 4.7e-29 132.9 84 66.7
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.3e-28 130.6 99 62.6
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.8e-28 129.0 99 61.6
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.8e-28 128.6 121 53.7
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.4e-25 121.3 175 42.9
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.2e-24 118.2 87 60.9
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 4.0e-20 103.2 93 54.8
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.6e-19 100.5 77 57.1
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.7e-15 87.8 72 54.2
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.9e-14 84.3 68 54.4
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 3.3e-14 83.6 59 61.0
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 3.6e-13 80.1 51 70.6
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-12 77.8 50 64.0
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 9.8e-11 72.0 55 58.2
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.4e-09 68.2 53 56.6


User provided reference genes

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