Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.5e-99 365.5 194 100.0
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 5.4e-22 108.6 68 82.4
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 9.2e-22 107.8 68 83.8
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 9.2e-22 107.8 68 82.4
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 1.2e-21 107.5 68 82.4
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 1.2e-21 107.5 68 82.4
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 1.2e-21 107.5 68 82.4
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 1.2e-21 107.5 68 82.4
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.2e-21 107.5 68 82.4
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 1.2e-21 107.5 68 83.8
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 80.9
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 80.9
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 80.9
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 80.9
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 80.9
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 80.9
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 80.9
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 80.9
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 2.1e-21 106.7 68 82.4
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 2.7e-21 106.3 68 80.9
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 2.7e-21 106.3 68 80.9
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 2.7e-21 106.3 68 80.9
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 2.7e-21 106.3 68 82.4
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 2.7e-21 106.3 68 80.9
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 2.7e-21 106.3 68 80.9
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 3.5e-21 105.9 68 80.9
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 3.5e-21 105.9 68 80.9
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 3.5e-21 105.9 68 80.9
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 3.5e-21 105.9 68 82.4
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.6e-21 105.5 68 82.4
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 6.0e-21 105.1 68 79.4
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 6.0e-21 105.1 68 80.9
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 6.0e-21 105.1 68 82.4
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 7.8e-21 104.8 68 80.9
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 7.8e-21 104.8 68 77.9
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 1.0e-20 104.4 68 79.4
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 1.0e-20 104.4 68 77.9
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 1.7e-20 103.6 68 77.9
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 1.7e-20 103.6 68 79.4
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 2.3e-20 103.2 68 77.9
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 3.0e-20 102.8 68 77.9
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 3.0e-20 102.8 68 76.5
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 5.1e-20 102.1 85 69.4
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 6.6e-20 101.7 68 79.4
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 6.6e-20 101.7 68 79.4
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 6.6e-20 101.7 68 75.0
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 1.1e-19 100.9 85 68.2
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 1.5e-19 100.5 68 76.5
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 1.5e-19 100.5 85 65.9
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 1.5e-19 100.5 85 67.1
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.9e-19 100.1 119 57.1
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 2.5e-19 99.8 65 78.5
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 2.5e-19 99.8 119 56.3
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 2.5e-19 99.8 68 75.0
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 2.5e-19 99.8 85 67.1
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 2.5e-19 99.8 119 57.1
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 2.5e-19 99.8 119 57.1
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 3.3e-19 99.4 119 57.1
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 3.3e-19 99.4 85 67.1
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 3.3e-19 99.4 119 57.1
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 3.3e-19 99.4 119 57.1
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 3.3e-19 99.4 119 56.3
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 4.3e-19 99.0 119 56.3
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 4.3e-19 99.0 119 56.3
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 5.6e-19 98.6 85 64.7
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 7.3e-19 98.2 119 54.6
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 7.3e-19 98.2 85 65.9
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 7.3e-19 98.2 68 73.5
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 9.6e-19 97.8 85 65.9
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 9.6e-19 97.8 85 65.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 9.6e-19 97.8 85 65.9
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 9.6e-19 97.8 85 65.9
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 1.2e-18 97.4 119 55.5
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 1.2e-18 97.4 119 55.5
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 2.1e-18 96.7 119 55.5
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 2.1e-18 96.7 119 55.5
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 2.8e-18 96.3 119 54.6
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 2.8e-18 96.3 119 54.6
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 2.8e-18 96.3 119 54.6
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 2.8e-18 96.3 119 54.6
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 3.6e-18 95.9 119 54.6
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 3.6e-18 95.9 85 64.7
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 3.6e-18 95.9 119 55.5
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 3.6e-18 95.9 119 55.5
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 3.6e-18 95.9 119 54.6
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 6.2e-18 95.1 119 54.6
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 1.4e-17 94.0 66 66.7
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 1.8e-17 93.6 59 83.1
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 2.4e-17 93.2 119 55.5
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 5.2e-17 92.0 85 63.5
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 5.2e-17 92.0 119 53.8
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 1.2e-16 90.9 68 72.1
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 2.0e-16 90.1 66 66.7
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 2.6e-16 89.7 96 59.4
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 2.6e-16 89.7 78 62.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 3.4e-16 89.4 135 48.9
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 3.4e-16 89.4 135 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 1.7e-15 87.0 68 60.3
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 2.9e-15 86.3 94 57.4
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 4.2e-14 82.4 85 55.3
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 1.2e-13 80.9 123 44.7
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.5e-11 73.9 119 48.7


User provided reference genes

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