Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1593.2 788 100.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1159.8 774 72.9
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1155.2 754 72.9
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1144.0 769 71.3
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1143.6 774 71.1
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1138.3 777 70.0
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 771 71.3
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1124.0 824 66.7
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1124.0 775 70.5
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1123.2 777 69.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1123.2 786 69.3
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1123.2 774 70.8
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 771 71.2
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1122.1 771 71.1
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1114.8 775 70.5
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1114.4 774 69.6
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1114.4 775 69.2
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 776 69.8
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1110.1 775 69.2
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1109.7 774 68.9
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1109.0 779 68.9
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1106.3 774 68.7
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1105.9 776 69.5
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1103.6 776 68.7
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1103.6 774 68.7
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1103.6 774 68.6
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1103.2 778 68.5
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1102.0 773 69.6
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1102.0 787 68.6
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1101.7 767 69.5
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1100.9 781 68.2
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1100.5 785 69.3
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1097.4 784 68.4
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1096.6 774 69.3
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1095.5 775 67.9
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1093.6 772 68.7
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 775 67.6
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1086.6 811 65.5
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1085.5 815 65.6
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1084.3 772 68.0
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1083.9 777 67.6
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1083.2 780 67.3
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1081.2 781 67.2
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1080.5 774 68.1
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1080.1 772 68.4
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1079.3 774 68.1
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1079.3 780 66.9
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1079.3 780 68.2
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1078.5 777 67.3
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 5.4e-312 1073.9 755 69.0
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 1.1e-311 1072.8 777 67.3
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 2.2e-311 1072.0 786 65.6
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 6.5e-311 1070.5 781 67.9
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 8.1e-311 1070.1 778 66.8
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 5.3e-310 1067.4 777 67.1
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 1.0e-308 1063.1 775 66.8
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 2.9e-308 1061.6 773 66.4
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 2.9e-308 1061.6 777 66.8
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 3.8e-308 1061.2 777 66.8
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 5.0e-308 1060.8 760 67.9
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 1.1e-307 1059.7 775 66.6
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 2.5e-307 1058.5 775 66.3
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 2.5e-307 1058.5 773 66.8
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 3.2e-307 1058.1 762 67.5
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 8.0e-306 1053.5 775 66.5
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.0e-305 1053.1 787 67.0
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 1.4e-305 1052.7 777 66.5
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 5.2e-305 1050.8 773 66.0
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 6.7e-305 1050.4 782 66.4
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 8.8e-305 1050.0 773 66.1
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 8.8e-305 1050.0 777 66.4
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 5.7e-304 1047.3 780 65.8
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 1.7e-303 1045.8 773 66.0
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.1e-302 1041.2 767 66.2
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 7.0e-302 1040.4 773 66.4
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 9.1e-302 1040.0 773 65.6
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 5.9e-301 1037.3 763 66.8
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 2.2e-300 1035.4 773 65.8
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 4.2e-299 1031.2 773 65.1
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 2.0e-296 1022.3 783 64.5
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 4.4e-296 1021.1 893 58.8
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.4e-294 1016.1 751 65.4
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 1.2e-288 996.5 682 70.5
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 2.0e-288 995.7 783 63.2
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 5.7e-288 994.2 781 63.3
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.8e-287 991.9 749 64.6
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 2.3e-284 982.2 786 62.6
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 6.6e-284 980.7 774 62.5
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 7.0e-278 960.7 771 61.7
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 3.5e-277 958.4 779 61.9
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.0e-276 956.8 783 61.0
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 8.6e-276 953.7 772 60.0
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 1.1e-275 953.4 757 63.1
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.5e-275 952.2 700 65.9
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 3.3e-275 951.8 735 65.0
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 3.3e-275 951.8 707 66.6
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 2.1e-274 949.1 664 69.0
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.8e-273 946.0 769 61.1
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 2.4e-270 935.6 743 63.5
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 9.2e-262 907.1 766 60.2
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 2.1e-261 906.0 767 61.8
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 6.6e-260 901.0 693 63.5
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 3.6e-250 868.6 780 59.7
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 1.2e-245 853.6 704 59.7
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 6.0e-237 824.7 637 64.4
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.0e-236 823.9 663 62.0
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-226 790.4 665 58.9
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 6.9e-217 758.1 650 57.5
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 2.5e-214 749.6 541 67.7
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 3.9e-212 742.3 563 63.8
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.4e-209 733.0 757 52.6
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 3.7e-202 709.1 514 67.5
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 8.3e-178 628.2 455 65.7
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 1.6e-173 614.0 445 67.2
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 1.9e-145 520.8 373 68.9
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.6e-139 500.4 612 47.2
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 3.7e-138 496.5 349 67.0
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.4e-113 414.8 265 75.5
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 7.9e-112 409.1 362 53.9
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 5.5e-89 333.2 248 64.1
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 7.7e-83 312.8 251 60.6
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 7.2e-81 306.2 185 75.7
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 5.5e-73 280.0 357 44.5
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.4e-68 264.6 163 76.1
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 3.1e-68 264.2 266 53.8
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 3.2e-65 254.2 251 58.6
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.7e-64 250.4 145 80.7
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 4.7e-64 250.4 250 54.8
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 2.3e-63 248.1 229 52.0
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.4e-60 238.0 145 77.2
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.2e-54 219.2 213 56.8
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.7e-45 188.7 113 77.9
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.7e-45 188.7 120 76.7
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 1.4e-44 185.7 106 81.1
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.4e-44 183.7 117 76.9
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 7.0e-44 183.3 148 61.5
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-41 174.1 209 49.3
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.2e-40 172.6 108 70.4
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 1.6e-40 172.2 150 56.7
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 9.8e-38 162.9 101 75.2
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.2e-37 161.8 120 65.0
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 4.1e-36 157.5 84 85.7
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 5.4e-36 157.1 117 65.8
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 7.8e-35 153.3 83 83.1
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.1e-31 142.9 87 75.9
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 1.8e-31 142.1 95 67.4
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.1e-31 141.4 105 68.6
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.1e-31 141.4 105 68.6
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.9e-31 139.8 105 67.6
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.0e-30 138.7 91 73.6
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.3e-29 133.3 87 70.1
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 1.1e-28 132.9 92 73.9
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.0e-26 126.3 104 61.5
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 1.2e-24 119.4 70 77.1
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.3e-21 109.4 81 59.3
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-20 105.9 222 34.7
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.0e-18 99.8 222 33.8
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.2e-16 92.8 153 36.6
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 4.0e-15 87.8 153 37.9
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.2e-12 77.8 59 67.8
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.7e-10 72.4 77 48.1
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 6.6e-10 70.5 171 32.2
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.9e-09 68.9 45 66.7
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 5.6e-09 67.4 44 63.6
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 4.8e-08 64.3 58 58.6
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 9.0e-07 60.1 37 62.2


User provided reference genes

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