Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 3.3e-80 301.6 146 100.0
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 2.8e-63 245.4 128 94.5
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 2.3e-25 119.4 67 73.1
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 5.1e-25 118.2 69 66.7
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 1.5e-24 116.7 73 67.1
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 2.6e-24 115.9 69 65.2
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 3.3e-24 115.5 65 69.2
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 7.4e-24 114.4 65 70.8
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 9.7e-24 114.0 91 51.6
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 9.7e-24 114.0 91 51.6
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 1.3e-23 113.6 91 53.8
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 1.3e-23 113.6 96 51.0
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 1.3e-23 113.6 93 55.9
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 1.7e-23 113.2 68 67.6
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 1.7e-23 113.2 92 55.4
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 2.2e-23 112.8 69 68.1
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 2.2e-23 112.8 65 67.7
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 2.2e-23 112.8 72 65.3
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 2.8e-23 112.5 74 62.2
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 2.8e-23 112.5 78 61.5
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 3.7e-23 112.1 63 66.7
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 4.8e-23 111.7 62 69.4
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 4.8e-23 111.7 72 63.9
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 6.3e-23 111.3 63 66.7
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 6.3e-23 111.3 74 62.2
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 1.4e-22 110.2 63 68.3
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 1.4e-22 110.2 63 69.8
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 2.4e-22 109.4 85 52.9
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 3.1e-22 109.0 62 69.4
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 4.1e-22 108.6 63 68.3
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 5.3e-22 108.2 63 69.8
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 7.0e-22 107.8 62 66.1
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 9.1e-22 107.5 101 48.5
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 9.1e-22 107.5 92 53.3
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 1.2e-21 107.1 81 55.6
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 2.6e-21 105.9 65 63.1
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 2.6e-21 105.9 76 56.6
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 1.0e-20 104.0 64 60.9
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 1.7e-20 103.2 63 63.5
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 2.2e-20 102.8 131 38.9
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 6.5e-20 101.3 67 62.7
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 8.5e-20 100.9 62 67.7
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 2.5e-19 99.4 68 60.3
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 7.2e-19 97.8 62 66.1
Mapoly0035s0047 Marchantia polymorpha HOM05D007770 ORTHO05D009827 9.4e-19 97.4 69 55.1
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 2.7e-18 95.9 91 46.2
Zm00001eb035580 Zea mays HOM05D007770 ORTHO05D009827 3.6e-18 95.5 134 43.3
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 4.7e-18 95.1 92 51.1
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 4.7e-18 95.1 92 51.1
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 1.0e-17 94.0 80 46.2
AagrBONN_evm.TU.Sc2ySwM_228.4990 Anthoceros agrestis HOM05D007770 ORTHO05D009827 1.8e-17 93.2 64 54.7
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 8.8e-17 90.9 76 51.3
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 3.3e-16 89.0 63 54.0
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 4.4e-16 88.6 92 45.7
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 4.4e-16 88.6 65 53.8
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 1.3e-15 87.0 141 37.6
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 1.7e-15 86.7 69 49.3
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 2.2e-15 86.3 62 56.5
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 2.2e-15 86.3 62 56.5
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 2.2e-15 86.3 63 54.0
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 2.8e-15 85.9 63 57.1
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 3.7e-15 85.5 63 57.1
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 3.7e-15 85.5 63 57.1
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 3.7e-15 85.5 79 46.8
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 6.3e-15 84.7 86 43.0
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 1.1e-14 84.0 63 54.0
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 1.4e-14 83.6 63 52.4
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 1.8e-14 83.2 63 54.0
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 4.1e-14 82.0 63 54.0
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 5.3e-14 81.6 90 41.1
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 3.5e-13 79.0 63 54.0
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 5.9e-13 78.2 72 45.8
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 1.7e-12 76.6 60 60.0
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 2.2e-12 76.3 44 65.9
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 6.5e-12 74.7 63 47.6
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 1.1e-11 73.9 70 45.7
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 1.5e-11 73.6 41 68.3
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 2.5e-11 72.8 43 62.8
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 3.2e-11 72.4 43 62.8
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 3.2e-11 72.4 40 70.0
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 5.5e-11 71.6 65 47.7
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 5.5e-11 71.6 41 65.9
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 7.2e-11 71.2 59 52.5
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 9.4e-11 70.9 40 65.0
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 1.2e-10 70.5 41 63.4
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 2.1e-10 69.7 62 50.0
Glyma.06G079000 Glycine max HOM05D007770 ORTHO05D009827 5.3e-06 55.1 30 66.7


User provided reference genes

Program Settings