Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 3.4e-84 315.5 223 100.0
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 3.9e-32 142.5 169 67.5
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 8.7e-32 141.4 223 55.2
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 2.5e-31 139.8 221 53.4
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 2.5e-31 139.8 158 68.4
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 4.3e-31 139.0 226 52.7
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 9.6e-31 137.9 223 55.6
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.3e-30 137.5 230 57.4
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.6e-30 137.1 170 74.1
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 2.8e-30 136.3 160 69.4
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 3.6e-30 136.0 224 55.8
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 3.6e-30 136.0 175 76.0
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 4.8e-30 135.6 168 73.2
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 4.8e-30 135.6 160 74.4
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 4.8e-30 135.6 227 53.3
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 6.2e-30 135.2 168 71.4
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 6.2e-30 135.2 113 67.3
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 6.2e-30 135.2 155 82.6
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 1.1e-29 134.4 228 53.9
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.1e-29 134.4 167 74.9
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 1.4e-29 134.0 176 63.6
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 2.4e-29 133.3 229 57.2
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 2.4e-29 133.3 170 69.4
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 3.1e-29 132.9 235 53.2
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 3.1e-29 132.9 226 55.3
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 4.0e-29 132.5 169 68.6
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 4.0e-29 132.5 170 64.1
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 5.3e-29 132.1 170 61.8
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 5.3e-29 132.1 228 59.6
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 5.3e-29 132.1 226 53.5
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 5.3e-29 132.1 166 63.3
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 6.9e-29 131.7 167 50.9
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.5e-28 130.6 169 61.5
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 1.5e-28 130.6 161 70.2
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 2.6e-28 129.8 222 53.6
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 2.6e-28 129.8 226 61.5
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 2.6e-28 129.8 154 63.6
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.6e-28 129.8 162 51.2
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 2.6e-28 129.8 158 66.5
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 3.4e-28 129.4 158 65.2
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 3.4e-28 129.4 98 73.5
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 3.4e-28 129.4 223 53.4
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 3.4e-28 129.4 223 53.4
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 3.4e-28 129.4 223 53.4
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 3.4e-28 129.4 223 50.2
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 4.5e-28 129.0 229 58.5
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 4.5e-28 129.0 231 52.4
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 9.9e-28 127.9 162 66.0
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 9.9e-28 127.9 229 58.5
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 9.9e-28 127.9 162 66.0
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 9.9e-28 127.9 158 69.6
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.3e-27 127.5 155 68.4
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.7e-27 127.1 157 61.1
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 1.7e-27 127.1 158 60.8
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 2.2e-27 126.7 166 71.1
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 3.8e-27 125.9 164 64.0
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 4.9e-27 125.6 167 64.7
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 4.9e-27 125.6 227 52.0
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 4.9e-27 125.6 164 51.8
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 4.9e-27 125.6 168 58.3
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 6.4e-27 125.2 164 50.6
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 6.4e-27 125.2 156 75.0
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 8.4e-27 124.8 160 61.9
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 8.4e-27 124.8 224 54.0
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.1e-26 124.4 220 54.5
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 1.1e-26 124.4 162 65.4
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 1.1e-26 124.4 225 50.2
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 1.1e-26 124.4 149 75.8
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.4e-26 124.0 143 52.4
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 1.4e-26 124.0 220 50.9
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 1.9e-26 123.6 160 58.1
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 1.9e-26 123.6 160 69.4
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 3.2e-26 122.9 158 55.7
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 3.2e-26 122.9 158 65.8
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 7.1e-26 121.7 221 56.6
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 9.3e-26 121.3 220 52.7
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 1.2e-25 120.9 170 61.2
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 1.2e-25 120.9 223 51.1
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 1.6e-25 120.6 223 50.2
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 2.1e-25 120.2 166 48.2
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 2.1e-25 120.2 220 55.0
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.1e-25 120.2 61 100.0
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 2.7e-25 119.8 220 50.9
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 3.5e-25 119.4 101 65.3
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 6.0e-25 118.6 221 52.5
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 1.8e-24 117.1 165 50.3
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 2.5e-23 113.2 227 49.3
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 1.3e-22 110.9 129 54.3
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 2.0e-20 103.6 170 46.5
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 3.4e-20 102.8 121 52.1
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 2.9e-19 99.8 99 62.6
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 1.4e-18 97.4 162 57.4
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 1.9e-18 97.1 86 58.1
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 2.4e-18 96.7 167 65.3
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 7.1e-18 95.1 221 35.7
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 4.6e-17 92.4 66 71.2
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 4.6e-17 92.4 95 56.8
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.0e-16 91.3 108 51.9
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 2.3e-16 90.1 108 51.9
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 3.0e-16 89.7 66 71.2
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 6.7e-16 88.6 66 68.2
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 8.7e-16 88.2 113 49.6
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 7.4e-15 85.1 135 41.5
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 7.6e-12 75.1 88 44.3
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 1.7e-11 73.9 89 52.8
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 2.5e-10 70.1 60 60.0
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 6.0e-09 65.5 105 62.9
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 6.0e-09 65.5 105 54.3
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 1.0e-08 64.7 105 58.1
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.9e-07 60.5 105 66.7


User provided reference genes

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