Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 6.0e-310 1066.6 521 100.0
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 4.6e-225 784.6 495 75.4
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 1.5e-223 779.6 481 77.3
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 1.2e-222 776.5 492 76.2
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 1.2e-222 776.5 495 74.1
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 2.1e-222 775.8 484 76.0
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 4.7e-222 774.6 502 73.9
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 6.2e-222 774.2 484 75.8
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 3.1e-221 771.9 479 77.0
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 5.2e-221 771.2 504 73.2
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 6.8e-221 770.8 503 73.8
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 8.9e-221 770.4 503 73.6
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 8.9e-221 770.4 500 74.0
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 2.0e-220 769.2 485 75.7
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 2.0e-220 769.2 503 73.2
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 7.5e-220 767.3 487 74.9
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 1.3e-219 766.5 484 74.6
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 2.2e-219 765.8 483 75.2
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 2.9e-219 765.4 487 75.2
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 4.9e-219 764.6 490 75.1
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 3.2e-218 761.9 496 73.2
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 4.1e-218 761.5 499 73.1
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 5.4e-218 761.1 499 73.1
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 7.0e-218 760.8 489 73.8
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 1.6e-217 759.6 496 73.0
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 1.6e-217 759.6 499 72.7
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 3.5e-217 758.4 485 74.8
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 1.0e-216 756.9 512 71.5
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.3e-216 756.5 490 73.9
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 1.3e-216 756.5 514 72.0
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 1.7e-216 756.1 514 72.0
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 1.7e-216 756.1 481 75.1
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 1.7e-216 756.1 491 72.9
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 2.3e-216 755.7 498 72.9
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 2.3e-216 755.7 483 74.3
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 3.0e-216 755.4 503 71.6
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 3.0e-216 755.4 511 71.4
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 3.0e-216 755.4 479 74.9
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 3.9e-216 755.0 479 73.9
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 6.6e-216 754.2 487 73.9
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 6.6e-216 754.2 483 76.0
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 1.5e-215 753.1 494 73.1
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 1.9e-215 752.7 494 72.1
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 1.9e-215 752.7 486 74.1
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 3.3e-215 751.9 491 73.9
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 5.6e-215 751.1 482 74.7
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 5.6e-215 751.1 485 73.6
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 7.3e-215 750.7 516 71.1
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 9.5e-215 750.4 500 73.0
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 2.8e-214 748.8 491 73.7
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 3.6e-214 748.4 483 75.4
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 3.6e-214 748.4 491 73.3
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 1.8e-213 746.1 481 74.0
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 1.8e-213 746.1 484 73.3
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 1.8e-213 746.1 484 73.3
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 1.8e-213 746.1 486 73.3
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 4.0e-213 745.0 518 70.5
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 5.2e-213 744.6 484 74.0
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 2.6e-212 742.3 483 73.5
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 4.4e-212 741.5 495 71.9
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 4.4e-212 741.5 494 72.5
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 1.3e-211 740.0 493 72.2
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 1.7e-211 739.6 493 72.2
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 3.7e-211 738.4 494 71.7
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 4.9e-211 738.0 494 71.7
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 8.3e-211 737.3 486 72.2
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 1.9e-210 736.1 493 72.2
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 3.2e-210 735.3 493 71.8
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 5.4e-210 734.6 493 72.0
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 2.7e-209 732.3 506 71.3
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 3.0e-208 728.8 510 69.6
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 5.1e-208 728.0 487 73.1
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 8.6e-208 727.2 487 70.4
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 1.5e-207 726.5 489 72.6
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 1.9e-207 726.1 540 66.1
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 1.1e-205 720.3 494 71.1
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 6.8e-205 717.6 524 67.4
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 2.0e-204 716.1 492 71.5
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.6e-201 706.4 484 71.3
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.1e-201 706.1 484 71.3
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 8.1e-198 694.1 485 67.0
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 1.4e-197 693.3 486 68.3
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 5.3e-197 691.4 489 67.7
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 7.6e-196 687.6 464 71.8
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 7.9e-185 651.0 429 72.7
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 2.6e-180 636.0 483 63.1
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 1.7e-179 633.3 471 64.3
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 1.8e-176 623.2 478 61.3
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 6.9e-173 611.3 386 74.1
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 2.3e-168 596.3 371 74.1
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 2.5e-159 566.2 483 60.0
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 3.3e-159 565.8 365 73.7
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 5.0e-155 552.0 480 57.7
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 4.5e-140 502.3 316 75.0
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 5.2e-136 488.8 329 72.9
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 2.4e-133 479.9 433 58.9
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 1.6e-132 477.2 331 70.4
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.7e-126 457.2 275 77.1
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.7e-118 430.6 312 67.0
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.2e-116 424.5 502 46.4
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 1.7e-99 367.5 268 68.7
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 1.1e-93 348.2 493 40.4
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 2.5e-90 337.0 225 72.0
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 1.6e-76 291.2 235 63.4
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 2.1e-76 290.8 210 68.6
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 1.9e-69 267.7 199 64.8
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 6.5e-46 189.5 139 67.6
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 1.2e-44 185.3 108 75.9
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 5.7e-42 176.4 140 66.4
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 3.8e-30 137.1 91 73.6
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 2.0e-23 114.8 102 60.8
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 4.2e-21 107.1 67 77.6
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 4.2e-21 107.1 67 77.6
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.5e-21 106.7 67 77.6
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 7.2e-21 106.3 67 76.1
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 9.4e-21 105.9 67 77.6
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 9.4e-21 105.9 67 77.6
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 9.4e-21 105.9 67 77.6
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.6e-20 105.1 67 77.6
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.4e-19 102.1 67 76.1
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 6.8e-19 99.8 67 71.6
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.3e-17 95.5 59 78.0
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 1.3e-17 95.5 59 78.0
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 1.3e-17 95.5 54 83.3
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 4.1e-16 90.5 61 73.8
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 2.7e-15 87.8 61 68.9
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 5.9e-15 86.7 59 71.2
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 4.2e-13 80.5 61 63.9
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 3.0e-11 74.3 361 24.7
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 5.2e-11 73.6 364 25.3
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 6.8e-11 73.2 376 23.4
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 6.8e-11 73.2 347 23.9
unitig_748.g8644 Utricularia gibba HOM05D006593 ORTHO05D008512 6.8e-11 73.2 430 23.7
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 1.2e-10 72.4 186 25.3
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 2.0e-10 71.6 362 24.9
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 3.4e-10 70.9 344 25.0
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 4.4e-10 70.5 375 24.0
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 4.4e-10 70.5 378 24.9
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 5.7e-10 70.1 356 23.6
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 7.5e-10 69.7 362 24.6
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 1.3e-09 68.9 356 23.3
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.3e-09 68.9 356 23.3
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 1.3e-09 68.9 71 49.3
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 1.3e-09 68.9 324 24.7
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 1.3e-09 68.9 355 24.8
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 1.3e-09 68.9 356 23.6
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 1.7e-09 68.6 71 49.3
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 1.7e-09 68.6 362 24.6
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 2.2e-09 68.2 389 24.2
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 2.2e-09 68.2 360 23.9
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 2.2e-09 68.2 356 23.3
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 2.2e-09 68.2 360 23.9
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.8e-09 67.8 356 23.3
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 3.7e-09 67.4 361 24.4
CiPaw.07G048200 Carya illinoinensis HOM05D006593 ORTHO05D008512 4.9e-09 67.0 360 23.6
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 6.3e-09 66.6 356 23.6
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 6.3e-09 66.6 58 51.7
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 8.3e-09 66.2 359 24.2
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.1e-08 65.9 356 22.8
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 1.4e-08 65.5 356 22.8
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 1.8e-08 65.1 39 87.2
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 1.8e-08 65.1 39 87.2
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 1.8e-08 65.1 337 23.7
THA.LOC104824911 Tarenaya hassleriana HOM05D006593 ORTHO05D008512 1.8e-08 65.1 353 24.1
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 1.8e-08 65.1 201 29.4
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 2.4e-08 64.7 205 27.8
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 2.4e-08 64.7 362 24.6
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 5.4e-08 63.5 362 24.3
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 5.4e-08 63.5 56 64.3
Cpa.g.sc55.33 Carica papaya HOM05D006593 ORTHO05D008512 7.0e-08 63.2 207 27.5
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 9.2e-08 62.8 159 28.3
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 9.2e-08 62.8 355 23.4
Potri.007G010600 Populus trichocarpa HOM05D006593 ORTHO05D008512 9.2e-08 62.8 323 24.5
Zm00001eb257050 Zea mays HOM05D006593 ORTHO05D008512 9.2e-08 62.8 187 28.9
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 2.0e-07 61.6 183 27.3
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 2.7e-07 61.2 369 25.2
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 2.7e-07 61.2 359 23.1
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 3.5e-07 60.8 383 25.6
Psat2g085480 Pisum sativum HOM05D006593 ORTHO05D008512 3.5e-07 60.8 219 26.5
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 4.5e-07 60.5 378 21.7
PGSC0003DMG400016138 Solanum tuberosum HOM05D006593 ORTHO05D008512 4.5e-07 60.5 409 22.0
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 4.5e-07 60.5 155 26.5
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 7.7e-07 59.7 340 22.6
DCAR_014189 Daucus carota HOM05D006593 ORTHO05D008512 1.3e-06 58.9 183 29.5
GSVIVG01006735001 Vitis vinifera HOM05D006593 ORTHO05D008512 2.3e-06 58.2 344 24.1


User provided reference genes

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