Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.3e-205 719.5 383 100.0
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.6e-97 360.5 355 58.0
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 6.4e-91 338.6 351 54.1
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 7.8e-89 331.6 350 54.6
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 3.0e-88 329.7 348 52.0
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 3.9e-88 329.3 345 53.0
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.5e-87 327.4 350 53.7
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 1.9e-87 327.0 350 54.6
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.9e-87 327.0 347 53.0
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 3.3e-87 326.2 352 51.1
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 2.1e-86 323.6 345 53.9
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 2.8e-86 323.2 350 54.0
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.6e-86 322.8 350 53.7
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 6.2e-86 322.0 348 53.2
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.0e-85 321.2 347 54.2
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.0e-85 321.2 358 50.3
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.4e-85 320.9 345 51.9
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.4e-85 320.9 357 52.1
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 2.3e-85 320.1 348 53.4
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.3e-85 320.1 347 51.6
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 3.1e-85 319.7 348 50.9
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 3.1e-85 319.7 348 51.1
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 4.0e-85 319.3 348 51.1
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 5.2e-85 318.9 346 54.0
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 5.2e-85 318.9 359 51.8
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 5.2e-85 318.9 349 53.3
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 6.8e-85 318.5 349 49.3
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.2e-84 317.8 349 52.1
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.5e-84 317.4 350 52.6
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.6e-84 316.6 354 50.0
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.6e-84 316.6 348 51.1
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 3.4e-84 316.2 345 51.0
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.4e-84 315.8 348 50.9
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 9.8e-84 314.7 350 49.4
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 2.9e-83 313.2 348 49.1
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.9e-83 312.4 348 50.3
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 6.4e-83 312.0 345 50.7
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 8.3e-83 311.6 344 52.9
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.4e-82 310.8 348 49.7
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.1e-82 309.3 374 50.5
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 7.0e-82 308.5 346 51.4
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 9.2e-82 308.1 347 51.3
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 1.2e-81 307.8 380 48.2
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 2.0e-81 307.0 345 50.4
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 4.6e-81 305.8 366 50.8
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 6.0e-81 305.4 413 47.7
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.8e-81 305.1 348 50.3
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 7.8e-81 305.1 345 49.6
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 3.0e-80 303.1 366 48.1
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.1e-79 301.2 367 48.0
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 2.5e-79 300.1 348 49.4
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 3.3e-79 299.7 348 48.6
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 3.3e-79 299.7 348 50.3
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 5.6e-79 298.9 421 43.5
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.2e-78 297.7 348 48.9
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.6e-78 297.4 366 47.5
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 1.6e-78 297.4 365 47.1
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 2.1e-78 297.0 350 48.3
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 2.1e-78 297.0 350 49.7
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 2.8e-78 296.6 339 51.9
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 3.6e-78 296.2 346 48.6
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 4.7e-78 295.8 339 51.6
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 6.2e-78 295.4 349 48.1
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.1e-77 294.7 345 47.0
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.1e-77 294.7 365 48.8
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.4e-76 289.3 348 48.3
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 4.4e-76 289.3 350 48.3
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 9.8e-76 288.1 348 47.1
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.7e-75 287.3 348 46.8
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 4.1e-74 282.7 348 46.6
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 7.1e-74 282.0 347 47.6
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 9.2e-74 281.6 350 47.7
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.2e-73 281.2 347 46.7
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.2e-73 281.2 350 46.9
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 1.6e-73 280.8 345 46.1
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 2.1e-73 280.4 347 45.8
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 2.7e-73 280.0 347 46.4
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.7e-73 280.0 347 47.0
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 3.5e-73 279.6 347 47.3
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 3.5e-73 279.6 347 45.8
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 7.8e-73 278.5 364 44.0
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 1.7e-72 277.3 347 46.7
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.3e-72 276.9 342 49.7
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 3.0e-72 276.6 348 46.0
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 3.0e-72 276.6 324 49.7
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 3.0e-72 276.6 348 46.3
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 3.9e-72 276.2 348 46.0
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.9e-72 276.2 458 41.0
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.5e-71 274.2 305 51.5
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.5e-71 274.2 312 53.2
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 4.3e-71 272.7 308 52.6
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 5.6e-71 272.3 374 44.9
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.2e-70 271.2 311 50.2
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.6e-70 270.8 359 47.4
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.2e-70 268.9 350 48.6
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 2.3e-69 266.9 349 45.6
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.2e-69 265.8 307 49.5
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 8.9e-69 265.0 350 47.1
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 2.0e-68 263.8 312 49.7
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 3.4e-68 263.1 370 43.0
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.3e-67 261.2 287 50.5
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 6.4e-67 258.8 308 48.7
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.9e-66 257.3 305 48.2
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 3.2e-66 256.5 466 38.2
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.6e-65 254.2 337 48.4
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 4.6e-65 252.7 281 50.2
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.0e-64 251.5 320 47.2
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 1.9e-63 247.3 350 43.4
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.3e-63 246.5 311 47.3
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 7.3e-63 245.4 319 46.7
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.1e-61 240.0 311 46.6
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 6.8e-61 238.8 325 44.3
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 4.4e-60 236.1 307 45.9
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.9e-58 230.7 312 44.9
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.3e-58 228.4 236 53.4
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.5e-55 221.1 561 33.0
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 2.4e-53 213.8 317 42.6
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 3.8e-51 206.5 257 49.0
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 4.9e-51 206.1 311 44.1
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 6.4e-51 205.7 308 42.5
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 7.9e-49 198.7 214 53.3
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.7e-48 197.6 344 36.9
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 6.6e-48 195.7 163 60.7
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 4.0e-45 186.4 156 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 9.0e-45 185.3 332 37.0
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.3e-43 181.4 127 67.7
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.9e-42 177.6 257 44.0
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 3.2e-42 176.8 344 36.6
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 2.1e-41 174.1 234 46.6
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.8e-40 171.0 157 59.9
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 2.8e-38 163.7 237 43.5
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.1e-37 161.8 366 30.9
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 9.0e-37 158.7 311 34.7
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 1.0e-35 155.2 113 67.3
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.0e-35 155.2 113 67.3
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.1e-34 149.1 112 62.5
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.6e-33 146.4 223 42.6
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 3.0e-32 143.7 184 45.7
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 4.1e-29 133.3 103 65.0
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.2e-28 131.7 153 46.4
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.6e-25 120.2 169 43.2
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-22 111.3 135 46.7
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.4e-18 98.2 110 53.6
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.0e-15 87.8 113 44.2
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.3e-14 85.1 249 30.1
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 6.3e-14 82.8 142 41.5
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.8e-13 81.3 113 42.5
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 3.1e-13 80.5 295 28.5
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 9.1e-13 79.0 128 38.3
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 8.5e-11 72.4 105 41.0


User provided reference genes

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