Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 1.1e-81 306.6 157 100.0
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 4.0e-15 85.5 81 54.3
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 2.0e-14 83.2 62 61.3
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 7.5e-14 81.3 58 67.2
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 1.3e-13 80.5 81 49.4
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 2.8e-13 79.3 144 38.2
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 3.7e-13 79.0 100 42.0
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.9e-13 78.6 59 62.7
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.9e-13 78.6 59 62.7
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 4.9e-13 78.6 81 50.6
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 8.3e-13 77.8 61 59.0
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 1.1e-12 77.4 59 61.0
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.1e-12 77.4 59 61.0
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 1.1e-12 77.4 58 65.5
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 1.4e-12 77.0 81 53.1
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 2.4e-12 76.3 90 48.9
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 2.4e-12 76.3 81 49.4
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 3.1e-12 75.9 61 55.7
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 4.1e-12 75.5 75 54.7
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 5.4e-12 75.1 81 49.4
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 5.4e-12 75.1 81 49.4
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 5.4e-12 75.1 81 49.4
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 7.0e-12 74.7 147 41.5
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 7.0e-12 74.7 61 54.1
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 7.0e-12 74.7 140 40.7
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 7.0e-12 74.7 58 55.2
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 9.2e-12 74.3 84 48.8
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 1.2e-11 73.9 66 54.5
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.2e-11 73.9 57 59.6
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 1.2e-11 73.9 61 55.7
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.6e-11 73.6 59 57.6
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 2.0e-11 73.2 61 52.5
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 2.7e-11 72.8 76 43.4
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 2.7e-11 72.8 60 53.3
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 2.7e-11 72.8 139 36.0
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 2.7e-11 72.8 57 57.9
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 4.5e-11 72.0 61 52.5
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 4.5e-11 72.0 89 43.8
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 1.0e-10 70.9 81 44.4
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 1.3e-10 70.5 132 34.1
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 1.3e-10 70.5 57 56.1
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.3e-10 70.5 142 33.1
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 1.3e-10 70.5 55 58.2
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 1.7e-10 70.1 81 48.1
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 1.7e-10 70.1 129 38.0
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 2.3e-10 69.7 132 34.1
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 2.3e-10 69.7 81 46.9
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 2.9e-10 69.3 62 56.5
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 2.9e-10 69.3 57 59.6
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 2.9e-10 69.3 61 50.8
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 3.8e-10 68.9 79 45.6
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 3.8e-10 68.9 92 39.1
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 3.8e-10 68.9 125 36.8
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 3.8e-10 68.9 57 56.1
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 5.0e-10 68.6 67 50.7
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 5.0e-10 68.6 81 40.7
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 5.0e-10 68.6 83 42.2
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 5.0e-10 68.6 57 59.6
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 8.6e-10 67.8 126 38.1
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 1.9e-09 66.6 151 35.8
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 1.9e-09 66.6 122 36.9
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 1.9e-09 66.6 86 44.2
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 1.9e-09 66.6 85 48.2
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 4.3e-09 65.5 58 51.7
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 4.3e-09 65.5 87 42.5
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 7.3e-09 64.7 81 42.0
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 7.3e-09 64.7 61 52.5
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 1.2e-08 63.9 69 44.9
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 1.2e-08 63.9 74 43.2
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 1.2e-08 63.9 58 50.0
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 1.2e-08 63.9 82 42.7
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 1.2e-08 63.9 81 43.2
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 1.6e-08 63.5 57 54.4
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 1.6e-08 63.5 57 54.4
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 1.6e-08 63.5 57 52.6
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 2.1e-08 63.2 57 57.9
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 2.1e-08 63.2 78 44.9
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 2.1e-08 63.2 81 43.2
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 4.7e-08 62.0 57 54.4
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 8.0e-08 61.2 58 50.0
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 8.0e-08 61.2 58 50.0
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 8.0e-08 61.2 72 47.2
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 1.4e-07 60.5 58 48.3
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 1.4e-07 60.5 58 48.3
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 1.4e-07 60.5 58 48.3
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.0e-07 59.3 48 52.1
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 4.0e-07 58.9 58 46.6
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 1.2e-06 57.4 121 33.9
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.6e-06 56.2 45 55.6
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 9.8e-06 54.3 70 42.9
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 9.8e-06 54.3 117 30.8


User provided reference genes

Program Settings