Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 2.0e-195 685.6 364 100.0
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 5.3e-103 378.6 359 56.8
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 3.4e-102 375.9 385 55.3
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 1.3e-101 374.0 360 56.9
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 1.1e-100 370.9 401 52.6
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 2.4e-100 369.8 364 53.8
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 4.2e-100 369.0 366 53.0
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 4.2e-100 369.0 350 58.0
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 7.9e-99 364.8 354 54.5
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 1.3e-98 364.0 366 54.9
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 5.1e-98 362.1 355 55.5
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 8.7e-98 361.3 366 53.3
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 1.5e-97 360.5 357 54.1
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 4.3e-97 359.0 358 53.9
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 7.4e-97 358.2 365 54.2
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 7.4e-97 358.2 351 55.0
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 1.3e-96 357.5 352 54.5
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 1.3e-96 357.5 366 53.0
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.6e-96 357.1 351 56.1
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 6.2e-96 355.1 350 55.1
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 1.4e-95 354.0 369 52.8
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 1.8e-95 353.6 363 52.3
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 1.8e-95 353.6 386 51.8
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.4e-95 353.2 376 52.1
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 6.9e-95 351.7 350 55.7
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 6.9e-95 351.7 366 51.9
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 1.5e-94 350.5 353 54.7
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 2.0e-94 350.1 366 51.9
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 3.4e-94 349.4 351 52.7
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 4.5e-94 349.0 366 52.2
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 7.6e-94 348.2 379 53.3
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 1.0e-93 347.8 365 52.3
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.0e-93 347.8 351 52.4
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 2.2e-93 346.7 351 54.4
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 2.2e-93 346.7 362 52.2
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 2.9e-93 346.3 350 53.7
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 2.9e-93 346.3 350 54.3
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 4.9e-93 345.5 351 52.1
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 6.4e-93 345.1 355 54.1
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 1.1e-92 344.4 359 51.0
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 1.1e-92 344.4 379 50.7
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 1.9e-92 343.6 350 52.9
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 2.5e-92 343.2 356 53.7
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 3.2e-92 342.8 356 53.7
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 3.2e-92 342.8 372 50.3
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 4.2e-92 342.4 352 53.7
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 5.5e-92 342.0 361 52.6
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 9.3e-92 341.3 353 52.7
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.2e-91 340.9 377 49.9
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 1.6e-91 340.5 377 50.7
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 1.6e-91 340.5 353 52.4
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 2.1e-91 340.1 338 54.7
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 2.1e-91 340.1 338 54.7
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 3.5e-91 339.3 407 47.7
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 4.6e-91 339.0 349 52.7
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 1.3e-90 337.4 374 50.3
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 1.8e-90 337.0 351 52.7
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 3.9e-90 335.9 339 54.3
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 5.1e-90 335.5 374 49.5
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 6.7e-90 335.1 340 53.2
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 6.7e-90 335.1 335 54.6
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 8.7e-90 334.7 339 54.3
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 8.7e-90 334.7 363 50.7
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.9e-89 333.6 338 53.6
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 3.3e-89 332.8 338 53.3
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 3.3e-89 332.8 364 49.2
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 4.3e-89 332.4 351 51.3
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 4.3e-89 332.4 373 49.1
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 7.4e-89 331.6 352 49.4
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 1.6e-88 330.5 338 53.8
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 2.1e-88 330.1 343 52.2
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.8e-88 329.7 338 53.3
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 3.7e-88 329.3 339 53.1
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 4.8e-88 328.9 365 49.9
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 4.8e-88 328.9 360 52.2
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 1.8e-87 327.0 353 52.7
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 2.4e-87 326.6 349 51.9
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 9.0e-87 324.7 356 50.3
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.3e-85 320.9 352 51.1
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 3.8e-85 319.3 353 49.9
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 3.8e-85 319.3 365 50.1
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 4.9e-85 318.9 350 50.6
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.2e-83 314.3 347 51.3
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 1.6e-83 313.9 357 48.7
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 1.9e-81 307.0 346 49.4
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 3.3e-81 306.2 361 49.3
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 4.3e-81 305.8 349 49.9
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 4.3e-81 305.8 349 49.9
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 4.3e-81 305.8 349 49.9
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 3.1e-79 299.7 349 48.7
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 4.1e-79 299.3 357 48.7
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 4.1e-79 299.3 326 50.0
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 4.1e-79 299.3 391 45.3
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.2e-78 297.7 233 65.2
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.7e-77 293.9 359 47.6
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 8.5e-77 291.6 364 47.3
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 8.5e-77 291.6 364 47.3
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 1.2e-75 287.7 364 44.2
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 3.0e-74 283.1 325 46.8
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 5.1e-74 282.3 318 48.7
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 3.7e-72 276.2 235 63.0
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 6.3e-72 275.4 360 43.3
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 1.1e-71 274.6 356 43.0
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 5.3e-71 272.3 349 46.4
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 1.2e-67 261.2 298 48.3
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 1.1e-63 248.1 295 47.5
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.4e-58 231.1 295 44.1
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 3.9e-58 229.6 234 55.1
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 8.8e-58 228.4 247 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 3.5e-54 216.5 356 36.0
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 1.4e-50 204.5 225 48.9
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 1.4e-50 204.5 225 48.9
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 7.0e-47 192.2 216 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 2.2e-45 187.2 225 47.1
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 3.4e-41 173.3 513 28.5
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 9.1e-39 165.2 297 37.0
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.2e-38 164.9 130 63.8
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 4.5e-38 162.9 131 64.1
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 7.7e-38 162.2 206 43.7
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 1.3e-37 161.4 230 39.1
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.3e-37 161.4 234 41.9
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 1.0e-34 151.8 130 63.8
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 3.0e-34 150.2 130 63.1
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 8.9e-34 148.7 190 45.8
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 3.4e-33 146.7 203 47.3
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 1.2e-30 138.3 169 46.2
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 4.3e-28 129.8 139 54.7
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 1.6e-27 127.9 211 33.6
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 1.2e-22 111.7 105 58.1
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 2.0e-22 110.9 277 30.7
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 5.0e-21 106.3 107 56.1
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.9e-20 104.4 117 48.7
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 1.2e-17 95.1 244 31.6
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 4.1e-15 86.7 138 39.1
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 9.2e-15 85.5 122 45.9
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 9.2e-15 85.5 122 45.9
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.1e-14 84.3 135 37.0
TWI38G1374 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 4.9e-08 63.2 392 22.4
TWI38G0547 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 4.1e-07 60.1 390 22.6
PSO210G4310 Papaver somniferum HOM05D002177 ORTHO05D002257 2.1e-06 57.8 337 23.1
TWI39G0451 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 2.7e-06 57.4 390 21.0
Glyma.17G129600 Glycine max HOM05D001741 ORTHO05D002196 3.5e-06 57.0 360 23.1
PGSC0003DMG400012809 Solanum tuberosum HOM05D002177 ORTHO05D002257 4.6e-06 56.6 413 21.5
Sed0008533 Sechium edule HOM05D002177 ORTHO05D002257 6.0e-06 56.2 409 22.0


User provided reference genes

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