Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 6.1e-89 330.9 175 100.0
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.0e-40 170.6 138 72.5
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 8.9e-40 167.5 135 71.1
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.5e-39 166.8 167 61.1
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.6e-39 166.0 158 62.7
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.4e-39 165.6 142 68.3
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 5.7e-39 164.9 156 64.1
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 9.8e-39 164.1 166 61.4
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.7e-38 163.3 150 65.3
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 2.2e-38 162.9 140 67.9
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 2.2e-38 162.9 140 67.9
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.7e-38 162.2 140 67.9
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 3.7e-38 162.2 165 61.8
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 6.4e-38 161.4 142 67.6
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 8.3e-38 161.0 132 72.7
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.1e-37 160.6 170 58.8
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 1.1e-37 160.6 146 66.4
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.1e-37 160.6 132 68.9
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.8e-37 159.8 175 56.0
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.8e-37 159.8 153 62.7
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.8e-37 159.8 149 62.4
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.8e-37 159.8 152 63.2
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.4e-37 159.5 133 68.4
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 3.2e-37 159.1 160 60.0
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.2e-36 157.1 128 67.2
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.0e-36 156.4 156 60.9
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.0e-36 156.4 164 57.9
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 2.0e-36 156.4 126 72.2
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 2.0e-36 156.4 154 61.7
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 3.5e-36 155.6 166 58.4
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 4.6e-36 155.2 166 58.4
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 5.9e-36 154.8 136 66.2
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 7.8e-36 154.5 136 65.4
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 7.8e-36 154.5 139 64.0
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.0e-35 154.1 136 66.2
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.0e-35 154.1 161 60.9
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.7e-35 153.3 134 67.2
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.7e-35 153.3 138 64.5
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.3e-35 152.9 136 66.2
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.3e-35 152.9 155 61.3
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 2.9e-35 152.5 159 60.4
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 2.9e-35 152.5 158 60.1
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.9e-35 152.5 129 68.2
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 3.9e-35 152.1 152 58.6
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 5.0e-35 151.8 138 63.0
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 6.6e-35 151.4 128 70.3
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 8.6e-35 151.0 165 57.6
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.1e-34 150.6 141 62.4
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.5e-34 150.2 152 57.9
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 1.5e-34 150.2 140 60.7
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.5e-34 150.2 134 65.7
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.5e-34 150.2 134 65.7
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.5e-34 150.2 163 58.3
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.5e-34 150.2 163 58.3
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.5e-34 150.2 144 62.5
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 2.5e-34 149.4 131 65.6
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.3e-34 149.1 159 57.2
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.3e-34 149.1 134 67.2
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.3e-34 149.1 182 54.4
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 4.3e-34 148.7 134 64.9
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 7.3e-34 147.9 164 56.1
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 7.3e-34 147.9 135 67.4
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 7.3e-34 147.9 159 57.9
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.2e-33 147.1 165 55.8
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.6e-33 146.7 133 62.4
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.8e-33 146.0 152 58.6
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.8e-33 146.0 141 61.7
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 3.6e-33 145.6 160 54.4
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 4.7e-33 145.2 169 55.0
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 4.7e-33 145.2 156 59.0
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 6.2e-33 144.8 162 55.6
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 8.0e-33 144.4 131 63.4
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 8.0e-33 144.4 151 58.3
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 8.0e-33 144.4 172 56.4
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 8.0e-33 144.4 157 56.7
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 8.0e-33 144.4 146 58.9
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.0e-32 144.1 169 54.4
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.0e-32 144.1 150 56.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.8e-32 143.3 137 62.8
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.8e-32 143.3 158 57.6
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 3.1e-32 142.5 125 64.8
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 3.1e-32 142.5 155 54.8
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.0e-32 142.1 163 54.6
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.2e-32 141.7 122 69.7
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 6.8e-32 141.4 135 60.7
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 6.8e-32 141.4 126 62.7
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 6.8e-32 141.4 124 62.9
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.2e-31 140.6 126 63.5
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.2e-31 140.6 169 52.7
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.2e-31 140.6 169 52.7
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.2e-31 140.6 154 57.8
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.2e-31 140.6 126 63.5
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.5e-31 140.2 125 63.2
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.5e-31 140.2 125 63.2
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.5e-31 140.2 125 63.2
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.5e-31 140.2 107 74.8
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.5e-31 140.2 151 55.0
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 2.0e-31 139.8 163 56.4
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.6e-31 139.4 154 56.5
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 3.4e-31 139.0 120 69.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 7.5e-31 137.9 157 57.3
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 3.7e-30 135.6 157 56.7
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.7e-30 135.6 126 61.9
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.7e-30 135.6 126 61.9
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 8.3e-30 134.4 141 56.7
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 3.2e-29 132.5 123 65.0
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 9.2e-29 131.0 109 67.0
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 9.2e-29 131.0 106 71.7
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 2.0e-28 129.8 117 67.5
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 2.7e-28 129.4 138 55.8
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 7.8e-28 127.9 118 65.3
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.0e-27 127.5 136 57.4
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.0e-27 127.5 130 57.7
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.3e-27 127.1 107 64.5
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.3e-27 127.1 134 57.5
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 3.9e-27 125.6 131 55.7
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 1.1e-26 124.0 157 51.0
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 3.3e-26 122.5 105 66.7
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 5.6e-26 121.7 130 56.2
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 7.3e-26 121.3 184 47.3
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 3.6e-25 119.0 135 57.0
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 3.6e-25 119.0 166 46.4
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.1e-24 117.5 154 50.0
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 3.1e-24 115.9 119 57.1
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 2.0e-23 113.2 96 68.8
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 7.5e-23 111.3 126 57.9
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.4e-21 106.3 239 38.1
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.1e-21 105.5 117 59.0
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 8.6e-19 97.8 104 60.6
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.6e-18 95.1 117 50.4
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 5.6e-18 95.1 119 48.7
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 8.1e-17 91.3 70 71.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.8e-16 90.1 68 69.1
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.8e-16 90.1 69 68.1
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 3.1e-16 89.4 114 51.8
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.0e-15 86.7 100 58.0
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 2.2e-14 83.2 102 51.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 9.2e-13 77.8 125 37.6
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.6e-12 77.0 119 47.1
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.1e-12 76.6 115 50.4
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 6.0e-12 75.1 52 69.2
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 2.3e-11 73.2 111 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 3.0e-11 72.8 122 39.3
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 2.4e-08 63.2 90 51.1
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.0e-08 62.4 60 65.0


User provided reference genes

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