Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016777 Vanilla planifolia HOM05D004950 ORTHO05D004838 3.0e-76 288.9 196 100.0
HPP92_002322 Vanilla planifolia HOM05D004950 ORTHO05D004838 6.7e-20 101.7 152 43.4
Os08g0481100 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 3.7e-18 95.9 169 42.0
Zm00001eb423860 Zea mays HOM05D020839 ORTHO05D004838 3.7e-18 95.9 160 43.1
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 1.4e-17 94.0 157 46.5
Os02g0572600 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 6.5e-15 85.1 124 43.5
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 1.9e-14 83.6 185 38.9
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 2.5e-14 83.2 143 45.5
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 4.2e-14 82.4 147 42.2
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 3.6e-13 79.3 150 39.3
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 4.6e-13 79.0 170 39.4
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 7.9e-13 78.2 147 40.1
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 1.0e-12 77.8 172 40.7
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 5.1e-12 75.5 164 39.0
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 6.7e-12 75.1 169 39.1
CSS0046927 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 8.8e-12 74.7 187 37.4
Zm00001eb244690 Zea mays HOM05D020839 ORTHO05D004838 1.1e-11 74.3 120 39.2
Gorai.003G041200 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.5e-11 73.9 169 37.9
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 1.5e-11 73.9 176 35.8
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 1.5e-11 73.9 147 40.8
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 2.5e-11 73.2 148 41.9
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 3.3e-11 72.8 182 39.6
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 3.3e-11 72.8 128 38.3
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 3.3e-11 72.8 147 39.5
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 7.4e-11 71.6 162 41.4
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 7.4e-11 71.6 169 35.5
Zm00001eb182800 Zea mays HOM05D020839 ORTHO05D004838 7.4e-11 71.6 130 38.5
Gohir.A02G129300 Gossypium hirsutum HOM05D004950 ORTHO05D004838 9.7e-11 71.2 143 40.6
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.3e-10 70.9 144 40.3
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 1.3e-10 70.9 140 37.9
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 1.7e-10 70.5 187 33.7
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 2.2e-10 70.1 140 40.7
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 2.2e-10 70.1 164 33.5
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 3.7e-10 69.3 187 36.4
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 4.8e-10 68.9 150 40.0
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 6.3e-10 68.6 122 39.3
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 6.3e-10 68.6 136 44.9
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 8.2e-10 68.2 194 37.1
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 1.4e-09 67.4 190 36.3
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 1.8e-09 67.0 158 39.2
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 3.1e-09 66.2 195 36.4
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 5.3e-09 65.5 147 34.7
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 5.3e-09 65.5 198 34.8
CDE10G1056 Ceratophyllum demersum HOM05D002657 ORTHO05D004838 5.3e-09 65.5 109 43.1
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 5.3e-09 65.5 215 30.7
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 1.2e-08 64.3 168 36.3
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.2e-08 64.3 115 39.1
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.2e-08 64.3 115 39.1
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.2e-08 64.3 115 39.1
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.2e-08 64.3 149 35.6
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.5e-08 63.9 160 35.0
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 2.0e-08 63.5 190 33.2
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 2.0e-08 63.5 144 34.7
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 4.5e-08 62.4 169 34.3
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 4.5e-08 62.4 171 33.3
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 5.9e-08 62.0 140 33.6
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 5.9e-08 62.0 192 37.0
Gohir.D03G040150 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.7e-08 61.6 163 36.2
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 7.7e-08 61.6 156 34.6
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 1.0e-07 61.2 102 43.1
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 1.0e-07 61.2 123 35.8
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 1.0e-07 61.2 169 33.7
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 6.5e-07 58.5 128 35.2
Nn5g30016 Nelumbo nucifera HOM05D002657 ORTHO05D004838 1.4e-06 57.4 57 56.1
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.9e-06 57.0 181 34.3
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 3.2e-06 56.2 175 33.7
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 3.2e-06 56.2 135 37.0
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 4.2e-06 55.8 150 32.7
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 5.5e-06 55.5 169 33.1
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 7.2e-06 55.1 153 35.9
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 7.2e-06 55.1 177 33.9
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 9.4e-06 54.7 103 38.8


User provided reference genes

Program Settings