Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 2.0e-68 262.3 131 100.0
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 5.6e-39 164.5 121 68.6
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 2.1e-38 162.5 120 65.0
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 6.2e-38 161.0 119 68.9
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 4.4e-36 154.8 122 64.8
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 7.6e-36 154.1 122 63.1
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 2.9e-35 152.1 122 63.1
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 3.8e-35 151.8 122 62.3
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 3.8e-35 151.8 122 62.3
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 6.4e-35 151.0 122 62.3
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 1.1e-34 150.2 122 61.5
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.1e-34 150.2 121 62.8
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 3.2e-34 148.7 122 59.0
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 4.2e-34 148.3 122 59.8
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 5.4e-34 147.9 122 60.7
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 5.4e-34 147.9 122 60.7
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 7.1e-34 147.5 122 60.7
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 9.3e-34 147.1 122 60.7
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 1.2e-33 146.7 122 61.5
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 1.2e-33 146.7 122 59.8
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 1.2e-33 146.7 122 59.8
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 1.2e-33 146.7 122 61.5
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 1.6e-33 146.4 122 59.0
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 1.6e-33 146.4 122 59.0
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 3.5e-33 145.2 121 61.2
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 3.5e-33 145.2 121 62.0
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 4.6e-33 144.8 122 60.7
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 4.6e-33 144.8 122 60.7
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 4.6e-33 144.8 122 60.7
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 6.0e-33 144.4 122 61.5
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 6.0e-33 144.4 116 62.9
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 6.0e-33 144.4 121 60.3
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 6.0e-33 144.4 122 60.7
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 6.0e-33 144.4 122 59.0
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 6.0e-33 144.4 121 58.7
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 6.0e-33 144.4 122 59.8
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 7.9e-33 144.1 122 59.0
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.0e-32 143.7 122 59.8
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 1.0e-32 143.7 120 60.0
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 1.0e-32 143.7 122 59.8
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 1.3e-32 143.3 122 59.8
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 2.3e-32 142.5 122 60.7
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 3.0e-32 142.1 122 58.2
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 3.0e-32 142.1 122 58.2
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 3.9e-32 141.7 122 57.4
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 3.9e-32 141.7 121 58.7
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 5.1e-32 141.4 121 59.5
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 5.1e-32 141.4 121 59.5
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 5.1e-32 141.4 122 60.7
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 6.6e-32 141.0 121 57.0
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 6.6e-32 141.0 119 60.5
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 8.7e-32 140.6 121 57.9
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 8.7e-32 140.6 122 57.4
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 1.1e-31 140.2 121 58.7
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 1.5e-31 139.8 122 56.6
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 1.9e-31 139.4 121 57.9
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 4.3e-31 138.3 121 57.0
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 5.6e-31 137.9 122 57.4
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 5.6e-31 137.9 122 58.2
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 7.4e-31 137.5 122 56.6
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 7.4e-31 137.5 112 62.5
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 7.4e-31 137.5 121 56.2
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 7.4e-31 137.5 121 58.7
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 9.6e-31 137.1 122 58.2
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 1.6e-30 136.3 120 55.0
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 2.1e-30 136.0 120 58.3
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 2.8e-30 135.6 122 56.6
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 2.8e-30 135.6 121 56.2
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 3.6e-30 135.2 122 55.7
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 3.6e-30 135.2 120 56.7
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 4.8e-30 134.8 122 54.9
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 6.2e-30 134.4 121 55.4
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 1.4e-29 133.3 122 56.6
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 1.4e-29 133.3 115 59.1
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.2e-28 130.2 138 50.7
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 2.0e-28 129.4 121 53.7
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 2.6e-28 129.0 120 55.8
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 3.4e-28 128.6 112 59.8
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 3.4e-28 128.6 120 55.8
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 4.5e-28 128.3 121 55.4
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 1.7e-27 126.3 122 54.1
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 1.7e-27 126.3 121 54.5
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 1.7e-27 126.3 121 54.5
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 2.2e-27 125.9 121 53.7
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 2.9e-27 125.6 121 54.5
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.9e-27 125.6 108 57.4
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 3.8e-27 125.2 121 54.5
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 4.9e-27 124.8 121 52.9
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 8.4e-27 124.0 121 53.7
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 1.1e-26 123.6 121 52.1
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 3.2e-26 122.1 121 52.9
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 7.1e-26 120.9 95 58.9
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.1e-23 113.6 92 63.0
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 1.3e-22 110.2 89 62.9
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 1.8e-21 106.3 124 45.2
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 7.1e-18 94.4 67 73.1
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 3.5e-17 92.0 80 61.2
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.9e-15 86.3 133 39.1
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.6e-14 83.2 115 43.5
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 1.1e-13 80.5 110 43.6
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 5.3e-13 78.2 140 35.7
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 1.2e-12 77.0 69 58.0
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.6e-12 75.9 124 38.7
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 2.2e-11 72.8 69 47.8
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 1.1e-10 70.5 75 54.7
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 2.1e-09 66.2 45 66.7
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 3.5e-09 65.5 50 54.0
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 6.1e-09 64.7 107 38.3
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.0e-08 63.9 56 62.5
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.0e-08 63.9 54 64.8
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 6.7e-08 61.2 53 66.0
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 1.9e-07 59.7 55 60.0
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 2.8e-06 55.8 59 45.8
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 4.8e-06 55.1 50 48.0
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 8.2e-06 54.3 119 34.5


User provided reference genes

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