Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016658 Vanilla planifolia HOM05D002025 ORTHO05D001991 1.9e-81 305.8 158 100.0
HPP92_016637 Vanilla planifolia HOM05D002025 ORTHO05D001991 3.0e-79 298.5 158 98.7
HPP92_026333 Vanilla planifolia HOM05D002025 ORTHO05D001991 2.8e-16 89.4 132 43.9
Os12g0621400 Oryza sativa ssp. japonica HOM05D002025 ORTHO05D001991 1.8e-15 86.7 120 44.2
HPP92_028255 Vanilla planifolia HOM05D002025 ORTHO05D001991 4.4e-14 82.0 133 44.4
Migut.J00733 Erythranthe guttata HOM05D002025 ORTHO05D001991 6.4e-13 78.2 151 41.7
HPP92_013936 Vanilla planifolia HOM05D002025 ORTHO05D001991 8.3e-13 77.8 136 36.8
PGR142G1790 Punica granatum HOM05D002025 ORTHO05D001991 3.2e-12 75.9 143 38.5
HPP92_019539 Vanilla planifolia HOM05D002025 ORTHO05D001991 3.2e-12 75.9 145 37.2
Gohir.D01G189800 Gossypium hirsutum HOM05D002025 ORTHO05D001991 5.4e-12 75.1 126 38.1
Gohir.A01G199800 Gossypium hirsutum HOM05D002025 ORTHO05D001991 1.6e-11 73.6 126 37.3
Sp6g36470 Schrenkiella parvula HOM05D002025 ORTHO05D001991 1.6e-11 73.6 130 39.2
Peaxi162Scf00203g00052 Petunia axillaris HOM05D002025 ORTHO05D001991 2.7e-11 72.8 121 38.8
DCAR_020681 Daucus carota HOM05D002025 ORTHO05D001991 4.6e-11 72.0 152 37.5
Duzib128G1567 Durio zibethinus HOM05D002025 ORTHO05D001991 1.0e-10 70.9 150 33.3
RcHm_v2.0_Chr3g0477261 Rosa chinensis HOM05D002025 ORTHO05D001991 1.0e-10 70.9 127 37.0
HPP92_018633 Vanilla planifolia HOM05D002025 ORTHO05D001991 1.3e-10 70.5 146 34.2
FAN05G4348 Fragaria x ananassa HOM05D002025 ORTHO05D001991 1.7e-10 70.1 126 39.7
FAN05G4575 Fragaria x ananassa HOM05D002025 ORTHO05D001991 1.7e-10 70.1 126 39.7
Aa31LG5G8620 Aethionema arabicum HOM05D002025 ORTHO05D001991 2.3e-10 69.7 139 33.1
Cfa020076 Carpinus fangiana HOM05D002025 ORTHO05D001991 2.3e-10 69.7 134 38.8
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 2.3e-10 69.7 127 36.2
Gorai.002G233600 Gossypium raimondii HOM05D002025 ORTHO05D001991 2.3e-10 69.7 125 36.0
BraA01t04167Z Brassica rapa HOM05D002025 ORTHO05D001991 3.0e-10 69.3 165 36.4
FvH4_6g20920 Fragaria vesca HOM05D002025 ORTHO05D001991 3.0e-10 69.3 126 38.9
FAN02G0183 Fragaria x ananassa HOM05D002025 ORTHO05D001991 3.0e-10 69.3 126 38.9
FAN14G3941 Fragaria x ananassa HOM05D002025 ORTHO05D001991 3.0e-10 69.3 126 38.9
Sabra16G0067700 Salix brachista HOM05D002025 ORTHO05D001991 3.0e-10 69.3 129 37.2
THA.LOC104809949 Tarenaya hassleriana HOM05D002025 ORTHO05D001991 3.0e-10 69.3 178 36.5
FAN09G2632 Fragaria x ananassa HOM05D002025 ORTHO05D001991 3.9e-10 68.9 129 37.2
Nitab4.5_0003557g0010 Nicotiana tabacum HOM05D002025 ORTHO05D001991 3.9e-10 68.9 131 38.2
Duzib106G0588 Durio zibethinus HOM05D002025 ORTHO05D001991 5.1e-10 68.6 147 36.1
Haze_20117 Corylus avellana HOM05D002025 ORTHO05D001991 6.6e-10 68.2 133 37.6
Cc06_g06920 Coffea canephora HOM05D002025 ORTHO05D001991 8.6e-10 67.8 128 37.5
Eucgr.K01912 Eucalyptus grandis HOM05D002025 ORTHO05D001991 8.6e-10 67.8 133 39.8
BcaB04g21123 Brassica carinata HOM05D002025 ORTHO05D001991 1.1e-09 67.4 172 36.0
Glyma.02G187300 Glycine max HOM05D002025 ORTHO05D001991 1.1e-09 67.4 149 35.6
Lj1P1059T26 Lonicera japonica HOM05D002025 ORTHO05D001991 1.1e-09 67.4 145 34.5
THA.LOC104816625 Tarenaya hassleriana HOM05D002025 ORTHO05D001991 1.1e-09 67.4 163 37.4
TAR369G1029 Trochodendron aralioides HOM05D002025 ORTHO05D001991 1.1e-09 67.4 138 33.3
Lsat_1_v5_gn_2_101961 Lactuca sativa HOM05D002025 ORTHO05D001991 1.5e-09 67.0 120 37.5
Nn4g24817 Nelumbo nucifera HOM05D002025 ORTHO05D001991 1.5e-09 67.0 135 37.8
Oeu045022.1 Olea europaea HOM05D002025 ORTHO05D001991 1.5e-09 67.0 123 40.7
ClCG02G024100 Citrullus lanatus HOM05D002025 ORTHO05D001991 1.9e-09 66.6 128 35.2
Oeu035663.1 Olea europaea HOM05D002025 ORTHO05D001991 1.9e-09 66.6 123 36.6
Thecc.05G109600 Theobroma cacao HOM05D002025 ORTHO05D001991 1.9e-09 66.6 139 36.0
COL.COLO4_29503 Corchorus olitorius HOM05D002025 ORTHO05D001991 2.5e-09 66.2 132 34.8
ECA238G4628 Erigeron canadensis HOM05D002025 ORTHO05D001991 2.5e-09 66.2 134 35.8
Migut.L01846 Erythranthe guttata HOM05D002025 ORTHO05D001991 3.3e-09 65.9 133 37.6
HanXRQChr07g0196581 Helianthus annuus HOM05D002025 ORTHO05D001991 3.3e-09 65.9 134 37.3
TAR623G1549 Trochodendron aralioides HOM05D002025 ORTHO05D001991 3.3e-09 65.9 135 34.1
CDE04G2582 Ceratophyllum demersum HOM05D000133 ORTHO05D000259 4.3e-09 65.5 124 38.7
MD12G1045100 Malus domestica HOM05D002025 ORTHO05D001991 4.3e-09 65.5 129 37.2
Oeu058126.1 Olea europaea HOM05D002025 ORTHO05D001991 5.6e-09 65.1 122 37.7
Phvul.007G278000 Phaseolus vulgaris HOM05D002025 ORTHO05D001991 5.6e-09 65.1 132 39.4
SGA_v2.0_scaffold112G31684 Striga asiatica HOM05D002025 ORTHO05D001991 5.6e-09 65.1 120 38.3
Gohir.A01G135600 Gossypium hirsutum HOM05D002025 ORTHO05D001991 7.3e-09 64.7 147 32.7
Manes.09G042300 Manihot esculenta HOM05D002025 ORTHO05D001991 9.5e-09 64.3 129 37.2
AL172U10020 Arabidopsis lyrata HOM05D002025 ORTHO05D001991 1.2e-08 63.9 132 35.6
AL4G20930 Arabidopsis lyrata HOM05D002025 ORTHO05D001991 1.2e-08 63.9 132 35.6
MELO3C014692.2 Cucumis melo HOM05D002025 ORTHO05D001991 1.2e-08 63.9 128 35.2
Carub.0004s0772 Capsella rubella HOM05D002025 ORTHO05D001991 1.6e-08 63.5 138 33.3
Glyma.10G084600 Glycine max HOM05D002025 ORTHO05D001991 1.6e-08 63.5 149 34.9
Glyma.10G084900 Glycine max HOM05D002025 ORTHO05D001991 1.6e-08 63.5 149 34.9
Gorai.002G153700 Gossypium raimondii HOM05D002025 ORTHO05D001991 1.6e-08 63.5 147 32.7
AL3G23250 Arabidopsis lyrata HOM05D002025 ORTHO05D001991 2.1e-08 63.2 168 34.5
C05p56220 Brassica napus HOM05D002025 ORTHO05D001991 2.1e-08 63.2 160 33.8
A05p37640 Brassica napus HOM05D002025 ORTHO05D001991 2.8e-08 62.8 160 33.1
BolC5t34286H Brassica oleracea HOM05D002025 ORTHO05D001991 2.8e-08 62.8 160 33.8
BraA05t22561Z Brassica rapa HOM05D002025 ORTHO05D001991 2.8e-08 62.8 160 33.1
Duzib093G1955 Durio zibethinus HOM05D002025 ORTHO05D001991 2.8e-08 62.8 152 34.2
Glyma.10G085200 Glycine max HOM05D002025 ORTHO05D001991 2.8e-08 62.8 149 34.2
Sp3g09920 Schrenkiella parvula HOM05D002025 ORTHO05D001991 2.8e-08 62.8 165 35.2
Thecc.09G268500 Theobroma cacao HOM05D002025 ORTHO05D001991 2.8e-08 62.8 130 30.8
MSTRG.5912 Avicennia marina HOM05D002025 ORTHO05D001991 3.6e-08 62.4 122 38.5
BcaB06g25590 Brassica carinata HOM05D002025 ORTHO05D001991 3.6e-08 62.4 163 33.1
Carub.0003s1102 Capsella rubella HOM05D002025 ORTHO05D001991 3.6e-08 62.4 170 32.9
CARHR086240 Cardamine hirsuta HOM05D002025 ORTHO05D001991 3.6e-08 62.4 167 35.9
Gohir.D05G080100 Gossypium hirsutum HOM05D002025 ORTHO05D001991 3.6e-08 62.4 130 36.9
Oeu020161.1 Olea europaea HOM05D002025 ORTHO05D001991 3.6e-08 62.4 130 36.9
MBI05_g12629_MAGBIO Magnolia biondii HOM05D002025 ORTHO05D001991 4.7e-08 62.0 144 31.2
Gohir.A04G058400 Gossypium hirsutum HOM05D002025 ORTHO05D001991 6.2e-08 61.6 126 34.9
HanXRQChr01g0026141 Helianthus annuus HOM05D002025 ORTHO05D001991 6.2e-08 61.6 124 36.3
Nitab4.5_0005542g0010 Nicotiana tabacum HOM05D002025 ORTHO05D001991 6.2e-08 61.6 126 38.1
BcaC09g48204 Brassica carinata HOM05D002025 ORTHO05D001991 8.1e-08 61.2 168 33.9
Nitab4.5_0000721g0110 Nicotiana tabacum HOM05D002025 ORTHO05D001991 8.1e-08 61.2 121 38.0
BolC1t05298H Brassica oleracea HOM05D002025 ORTHO05D001991 1.1e-07 60.8 169 33.7
CARHR207130 Cardamine hirsuta HOM05D002025 ORTHO05D001991 1.1e-07 60.8 125 32.0
Thhalv10021370m.g Eutrema salsugineum HOM05D002025 ORTHO05D001991 1.1e-07 60.8 171 34.5
MD14G1044000 Malus domestica HOM05D002025 ORTHO05D001991 1.1e-07 60.8 137 33.6
Nitab4.5_0000835g0060 Nicotiana tabacum HOM05D002025 ORTHO05D001991 1.1e-07 60.8 126 34.1
CANSAT54G0233 Cannabis sativa HOM05D002025 ORTHO05D001991 1.4e-07 60.5 128 35.2
Gohir.D01G122800 Gossypium hirsutum HOM05D002025 ORTHO05D001991 1.4e-07 60.5 147 32.0
Prupe.7G090300 Prunus persica HOM05D002025 ORTHO05D001991 1.4e-07 60.5 132 35.6
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.8e-07 60.1 122 37.7
COL.COLO4_25368 Corchorus olitorius HOM05D002025 ORTHO05D001991 1.8e-07 60.1 132 31.1
DCAR_013457 Daucus carota HOM05D002025 ORTHO05D001991 1.8e-07 60.1 131 31.3
Gohir.D04G092900 Gossypium hirsutum HOM05D002025 ORTHO05D001991 1.8e-07 60.1 125 34.4
Gorai.009G394800 Gossypium raimondii HOM05D002025 ORTHO05D001991 1.8e-07 60.1 125 34.4
Nn6g34593 Nelumbo nucifera HOM05D002025 ORTHO05D001991 1.8e-07 60.1 125 36.0
ATR0618G098 Amborella trichopoda HOM05D002025 ORTHO05D001991 2.3e-07 59.7 124 35.5
DCAR_016911 Daucus carota HOM05D002025 ORTHO05D001991 2.3e-07 59.7 137 32.8
Gorai.009G081700 Gossypium raimondii HOM05D002025 ORTHO05D001991 2.3e-07 59.7 132 34.1
Actinidia37774 Actinidia chinensis HOM05D002025 ORTHO05D001991 3.1e-07 59.3 126 37.3
CiPaw.09G023600 Carya illinoinensis HOM05D002025 ORTHO05D001991 3.1e-07 59.3 140 35.7
Lj7A141T17 Lonicera japonica HOM05D002025 ORTHO05D001991 3.1e-07 59.3 122 35.2
Lalb_Chr01g0017741 Lupinus albus HOM05D002025 ORTHO05D001991 3.1e-07 59.3 136 32.4
Sed0003384 Sechium edule HOM05D002025 ORTHO05D001991 3.1e-07 59.3 139 30.9
VMungo0720G2852 Vigna mungo HOM05D002025 ORTHO05D001991 3.1e-07 59.3 132 34.1
AT3G11690 Arabidopsis thaliana HOM05D002025 ORTHO05D001991 4.0e-07 58.9 167 32.9
Haze_23603 Corylus avellana HOM05D002025 ORTHO05D001991 4.0e-07 58.9 144 33.3
HanXRQChr14g0453261 Helianthus annuus HOM05D002025 ORTHO05D001991 4.0e-07 58.9 123 37.4
Sed0017347 Sechium edule HOM05D002025 ORTHO05D001991 4.0e-07 58.9 126 35.7
C09p70410 Brassica napus HOM05D002025 ORTHO05D001991 5.2e-07 58.5 128 33.6
Manes.11G104560 Manihot esculenta HOM05D002025 ORTHO05D001991 5.2e-07 58.5 134 35.1
Actinidia03858 Actinidia chinensis HOM05D002025 ORTHO05D001991 6.8e-07 58.2 131 35.9
Actinidia03966 Actinidia chinensis HOM05D002025 ORTHO05D001991 6.8e-07 58.2 131 35.9
EL10Ac5g11818 Beta vulgaris HOM05D002025 ORTHO05D001991 6.8e-07 58.2 140 32.1
Phvul.001G198100 Phaseolus vulgaris HOM05D002025 ORTHO05D001991 8.9e-07 57.8 126 34.9
Potri.006G200100 Populus trichocarpa HOM05D002025 ORTHO05D001991 8.9e-07 57.8 129 36.4
VMungo1383G1576 Vigna mungo HOM05D002025 ORTHO05D001991 8.9e-07 57.8 126 34.9
Zm00001eb218490 Zea mays HOM05D002025 ORTHO05D001991 8.9e-07 57.8 125 37.6
ClCG10G018030 Citrullus lanatus HOM05D002025 ORTHO05D001991 1.2e-06 57.4 129 33.3
Psat3g027400 Pisum sativum HOM05D002025 ORTHO05D001991 1.2e-06 57.4 141 33.3
BcaC01g04926 Brassica carinata HOM05D002025 ORTHO05D001991 1.5e-06 57.0 123 31.7
BolC3t15546H Brassica oleracea HOM05D002025 ORTHO05D001991 1.5e-06 57.0 123 31.7
BraA03t11883Z Brassica rapa HOM05D002025 ORTHO05D001991 1.5e-06 57.0 123 31.7
MELO3C017376.2 Cucumis melo HOM05D002025 ORTHO05D001991 1.5e-06 57.0 155 29.7
Phvul.007G265700 Phaseolus vulgaris HOM05D002025 ORTHO05D001991 1.5e-06 57.0 136 34.6
TPR.G21240 Trifolium pratense HOM05D002025 ORTHO05D001991 1.5e-06 57.0 141 36.2
BcaB01g03054 Brassica carinata HOM05D002025 ORTHO05D001991 2.0e-06 56.6 120 32.5
AUR62038433 Chenopodium quinoa HOM05D002025 ORTHO05D001991 2.0e-06 56.6 148 30.4
DCAR_012256 Daucus carota HOM05D002025 ORTHO05D001991 2.0e-06 56.6 121 33.9
Duzib150G1621 Durio zibethinus HOM05D002025 ORTHO05D001991 2.0e-06 56.6 135 31.1
TWI74G1501 Tripterygium wilfordii HOM05D002025 ORTHO05D001991 2.0e-06 56.6 121 35.5
AUR62036330 Chenopodium quinoa HOM05D002025 ORTHO05D001991 2.6e-06 56.2 148 30.4
Thhalv10016087m.g Eutrema salsugineum HOM05D002025 ORTHO05D001991 2.6e-06 56.2 122 33.6
Glyma.13G310800 Glycine max HOM05D002025 ORTHO05D001991 2.6e-06 56.2 154 28.6
Lj7A139T11 Lonicera japonica HOM05D002025 ORTHO05D001991 2.6e-06 56.2 122 34.4
Gohir.D09G128600 Gossypium hirsutum HOM05D002025 ORTHO05D001991 3.4e-06 55.8 127 34.6
Gorai.006G147300 Gossypium raimondii HOM05D002025 ORTHO05D001991 3.4e-06 55.8 127 34.6
Potri.016G066300 Populus trichocarpa HOM05D002025 ORTHO05D001991 3.4e-06 55.8 131 34.4
TPR.G34437 Trifolium pratense HOM05D002025 ORTHO05D001991 3.4e-06 55.8 135 31.1
CiPaw.13G126200 Carya illinoinensis HOM05D002025 ORTHO05D001991 4.4e-06 55.5 132 31.1
CsaV3_1G004500 Cucumis sativus L. HOM05D002025 ORTHO05D001991 4.4e-06 55.5 135 28.1
Hma1.2p1_0969F.1_g242560 Hydrangea macrophylla HOM05D002025 ORTHO05D001991 4.4e-06 55.5 101 37.6
Sopen01g002770 Solanum pennellii HOM05D002025 ORTHO05D001991 4.4e-06 55.5 132 33.3
BcaC02g10859 Brassica carinata HOM05D002025 ORTHO05D001991 5.8e-06 55.1 132 33.3
C04p24370 Brassica napus HOM05D002025 ORTHO05D001991 5.8e-06 55.1 132 32.6
BolC4t23935H Brassica oleracea HOM05D002025 ORTHO05D001991 5.8e-06 55.1 132 32.6
Lalb_Chr25g0287861 Lupinus albus HOM05D002025 ORTHO05D001991 7.6e-06 54.7 126 33.3
BcaC05g29340 Brassica carinata HOM05D002025 ORTHO05D001991 9.9e-06 54.3 141 32.6
A07p18020 Brassica napus HOM05D002025 ORTHO05D001991 9.9e-06 54.3 125 32.0
BolC9t59787H Brassica oleracea HOM05D002025 ORTHO05D001991 9.9e-06 54.3 128 32.0
BraA07t29520Z Brassica rapa HOM05D002025 ORTHO05D001991 9.9e-06 54.3 125 32.0
Manes.06G067800 Manihot esculenta HOM05D002025 ORTHO05D001991 9.9e-06 54.3 123 35.0
Peaxi162Scf00098g00155 Petunia axillaris HOM05D002025 ORTHO05D001991 9.9e-06 54.3 120 33.3
SGA_v2.0_scaffold31G12825 Striga asiatica HOM05D002025 ORTHO05D001991 9.9e-06 54.3 105 37.1


User provided reference genes

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