Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.7e-77 292.0 149 100.0
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.1e-62 241.9 149 76.5
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.1e-62 241.5 149 76.5
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.8e-57 226.1 149 69.8
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 4.1e-54 214.9 140 71.4
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 3.5e-53 211.8 143 69.2
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.0e-53 211.1 143 67.8
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.0e-53 211.1 144 69.4
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.0e-52 210.3 134 71.6
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.0e-52 210.3 143 68.5
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 5.0e-52 208.0 145 67.6
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.1e-51 206.8 143 69.2
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.9e-51 206.1 143 68.5
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 2.5e-51 205.7 135 70.4
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.6e-50 203.0 145 64.8
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.6e-50 203.0 144 63.9
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.1e-50 202.6 144 63.9
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 2.1e-50 202.6 137 66.4
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 2.1e-50 202.6 142 66.9
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.8e-50 202.2 145 65.5
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 3.6e-50 201.8 137 65.7
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.6e-50 201.8 144 68.1
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.6e-50 201.8 134 65.7
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 3.6e-50 201.8 140 65.0
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 4.7e-50 201.4 144 62.5
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 4.7e-50 201.4 135 69.6
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 8.0e-50 200.7 144 63.2
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 8.0e-50 200.7 143 64.3
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 8.0e-50 200.7 134 67.9
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 8.0e-50 200.7 143 62.2
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.1e-49 200.3 144 65.3
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.1e-49 200.3 142 64.8
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.1e-49 200.3 144 66.0
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.8e-49 199.5 134 66.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.8e-49 199.5 143 62.9
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 2.3e-49 199.1 143 63.6
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 3.1e-49 198.7 138 65.2
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.1e-49 198.7 135 64.4
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.0e-49 198.4 143 62.9
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 4.0e-49 198.4 144 61.1
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 4.0e-49 198.4 143 62.2
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 5.2e-49 198.0 134 66.4
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 6.8e-49 197.6 121 73.6
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 8.9e-49 197.2 143 63.6
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 8.9e-49 197.2 143 63.6
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 8.9e-49 197.2 135 65.9
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.2e-48 196.8 135 66.7
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.2e-48 196.8 143 64.3
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.2e-48 196.8 143 64.3
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.5e-48 196.4 136 67.6
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.5e-48 196.4 136 67.6
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.5e-48 196.4 144 60.4
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.0e-48 196.1 143 66.4
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 2.6e-48 195.7 141 65.2
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.6e-48 195.7 144 62.5
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 2.6e-48 195.7 143 65.7
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.4e-48 194.9 143 62.2
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 4.4e-48 194.9 143 61.5
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.4e-48 194.9 138 62.3
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 5.8e-48 194.5 148 62.2
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 7.5e-48 194.1 138 63.0
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 7.5e-48 194.1 143 63.6
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 9.8e-48 193.7 137 64.2
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 9.8e-48 193.7 137 64.2
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 9.8e-48 193.7 135 64.4
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.3e-47 193.4 143 63.6
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.7e-47 193.0 135 65.9
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.7e-47 193.0 135 65.9
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.7e-47 193.0 141 58.9
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.7e-47 193.0 144 59.0
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.2e-47 192.6 143 64.3
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.2e-47 192.6 135 65.2
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 2.2e-47 192.6 135 65.9
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.9e-47 192.2 137 63.5
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 3.7e-47 191.8 144 59.0
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 4.9e-47 191.4 134 64.2
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 4.9e-47 191.4 134 64.2
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 6.4e-47 191.0 144 63.2
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 6.4e-47 191.0 143 60.8
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.4e-47 191.0 135 64.4
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 6.4e-47 191.0 133 64.7
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 6.4e-47 191.0 144 62.5
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.1e-46 190.3 135 68.9
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.1e-46 190.3 135 63.7
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.1e-46 190.3 135 63.7
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.4e-46 189.9 134 63.4
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.4e-46 189.9 144 59.0
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.9e-46 189.5 143 61.5
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 3.2e-46 188.7 145 61.4
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 5.4e-46 188.0 171 55.0
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 9.2e-46 187.2 127 69.3
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.2e-45 186.8 159 57.2
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.6e-45 186.4 134 63.4
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.6e-45 186.4 134 63.4
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.7e-45 185.7 129 64.3
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 2.7e-45 185.7 146 59.6
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.7e-45 185.7 144 60.4
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 3.5e-45 185.3 134 61.9
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 4.6e-45 184.9 144 61.1
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.0e-45 184.5 134 62.7
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.0e-44 183.7 144 56.9
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.3e-44 183.3 143 61.5
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.3e-44 183.3 128 67.2
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 3.0e-44 182.2 121 71.1
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 6.6e-44 181.0 143 58.0
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 8.6e-44 180.6 146 56.8
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 8.6e-44 180.6 144 61.1
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.5e-43 179.9 153 56.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 2.5e-43 179.1 138 60.1
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 5.6e-43 177.9 144 60.4
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 7.3e-43 177.6 144 59.0
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 7.3e-43 177.6 124 64.5
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 7.3e-43 177.6 121 65.3
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 9.5e-43 177.2 142 59.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 2.1e-42 176.0 144 58.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.8e-42 175.6 144 58.3
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 4.7e-42 174.9 134 59.7
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 6.2e-42 174.5 144 60.4
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 8.1e-42 174.1 141 56.0
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 8.9e-41 170.6 129 58.9
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.2e-40 170.2 125 60.8
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-40 169.9 135 58.5
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-40 169.9 135 54.8
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.4e-40 168.7 119 63.0
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.7e-39 166.4 143 55.9
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.4e-38 163.3 111 63.1
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.4e-38 163.3 111 63.1
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.4e-38 163.3 117 64.1
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.9e-38 162.9 147 56.5
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 2.1e-37 159.5 112 62.5
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.0e-37 157.9 140 55.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.0e-37 157.9 140 55.0
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-36 156.8 120 60.8
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.3e-36 156.8 198 42.9
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.7e-34 148.3 140 50.7
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.4e-33 146.7 144 54.2
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.8e-33 144.4 99 62.6
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 5.6e-27 124.8 133 49.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.2e-26 123.6 136 44.9
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.8e-26 122.5 130 47.7
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 8.1e-26 120.9 99 53.5
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-25 120.6 99 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.3e-23 113.6 140 43.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.7e-23 113.2 85 61.2
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.2e-23 112.8 140 42.9
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 1.9e-22 109.8 83 53.0
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.2e-21 107.1 131 42.7
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 2.1e-21 106.3 137 44.5
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 5.1e-20 101.7 124 41.1
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.5e-19 99.4 136 38.2
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.0e-17 92.0 144 34.7
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 9.9e-16 87.4 100 47.0
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.3e-15 87.0 108 46.3
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.9e-14 83.2 54 59.3
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.1e-13 79.7 90 45.6
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-13 79.7 59 54.2
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 2.1e-13 79.7 61 52.5
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-11 73.6 46 76.1
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-11 73.6 46 76.1
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-11 73.6 46 76.1
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.5e-11 73.6 138 33.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 4.3e-11 72.0 46 73.9
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 4.8e-10 68.6 131 34.4
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.2e-08 63.9 49 55.1
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 4.5e-08 62.0 51 58.8


User provided reference genes

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