Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 8.8e-54 213.4 109 100.0
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.6e-21 105.5 85 63.5
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 9.8e-21 103.6 74 70.3
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.7e-20 102.8 119 52.9
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 2.2e-20 102.4 74 67.6
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 2.8e-20 102.1 126 50.0
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 4.9e-20 101.3 69 68.1
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 6.3e-20 100.9 126 49.2
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 8.3e-20 100.5 74 64.9
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 2.4e-19 99.0 74 60.8
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 3.1e-19 98.6 69 69.6
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 3.1e-19 98.6 124 48.4
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 3.1e-19 98.6 74 62.2
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 5.4e-19 97.8 69 69.6
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 5.4e-19 97.8 83 60.2
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 7.0e-19 97.4 124 47.6
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 9.2e-19 97.1 116 51.7
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 9.2e-19 97.1 65 73.8
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.2e-18 96.7 128 46.9
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 1.2e-18 96.7 124 45.2
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.2e-18 96.7 68 69.1
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 1.2e-18 96.7 69 65.2
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.6e-18 96.3 119 48.7
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.6e-18 96.3 74 62.2
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 1.6e-18 96.3 62 74.2
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.0e-18 95.9 71 67.6
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 2.7e-18 95.5 74 59.5
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 3.5e-18 95.1 83 59.0
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 3.5e-18 95.1 83 57.8
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 3.5e-18 95.1 74 62.2
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 4.5e-18 94.7 117 50.4
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 4.5e-18 94.7 79 60.8
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 4.5e-18 94.7 66 71.2
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 5.9e-18 94.4 117 50.4
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 5.9e-18 94.4 69 66.7
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 5.9e-18 94.4 69 63.8
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 5.9e-18 94.4 69 62.3
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 1.0e-17 93.6 69 65.2
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.0e-17 93.6 69 65.2
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 1.3e-17 93.2 69 65.2
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.3e-17 93.2 57 77.2
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.7e-17 92.8 74 62.2
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 1.7e-17 92.8 69 66.7
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.7e-17 92.8 69 63.8
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 2.3e-17 92.4 124 46.0
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 2.3e-17 92.4 63 68.3
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 3.8e-17 91.7 66 71.2
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 3.8e-17 91.7 129 41.9
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 5.0e-17 91.3 76 60.5
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 6.6e-17 90.9 69 66.7
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 6.6e-17 90.9 76 60.5
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 6.6e-17 90.9 76 60.5
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 6.6e-17 90.9 105 49.5
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 8.6e-17 90.5 127 42.5
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.1e-16 90.1 74 58.1
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.5e-16 89.7 64 68.8
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 1.9e-16 89.4 71 63.4
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.3e-16 88.6 66 68.2
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 3.3e-16 88.6 73 57.5
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 3.3e-16 88.6 121 43.0
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 4.3e-16 88.2 66 66.7
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 9.5e-16 87.0 69 59.4
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.6e-15 86.3 88 54.5
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.6e-15 86.3 71 59.2
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 1.6e-15 86.3 74 60.8
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.6e-15 86.3 69 58.0
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.6e-15 86.3 70 62.9
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 3.6e-15 85.1 75 58.7
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 4.7e-15 84.7 70 61.4
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 8.0e-15 84.0 69 58.0
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.0e-14 83.6 64 65.6
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.0e-14 83.6 64 65.6
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.0e-14 83.6 64 65.6
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.0e-14 83.6 64 65.6
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 3.0e-14 82.0 151 38.4
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 4.0e-14 81.6 69 55.1
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 6.8e-14 80.9 69 55.1
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 2.6e-13 79.0 59 64.4
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 3.4e-13 78.6 57 63.2
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 7.5e-13 77.4 70 55.7
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 6.4e-12 74.3 70 54.3
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 3.2e-11 72.0 74 52.7
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 6.0e-10 67.8 59 57.6
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.3e-09 66.6 52 63.5
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 3.6e-07 58.5 62 40.3
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 1.4e-06 56.6 48 56.2
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 3.1e-06 55.5 48 56.2
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 4.0e-06 55.1 48 54.2


User provided reference genes

Program Settings